.gitignore

# History files
.Rhistory
.Rapp.history
# Session Data files
.RData
# User-specific files
.Ruserdata
# Example code in package build process
*-Ex.R
# Output files from R CMD build
/*.tar.gz
# Output files from R CMD check
/*.Rcheck/
# RStudio files
.Rproj.user/
# produced vignettes
vignettes/*.html
vignettes/*.pdf
# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth
# knitr and R markdown default cache directories
*_cache/
/cache/
# Temporary files created by R markdown
*.utf8.md
*.knit.md
# R Environment Variables
.Renviron
#DS Store files
.DS_Store
#p and r output files
Mcap2021/Output/Respiration/RespirationPlots/
Mcap2021/Output/Respiration/PhotosynthesisPlots/
#knit files
*.html
#large figure folders
Mcap2021/Figures/Metabolomics/metabolite_pool_vs_labeling
Mcap2021/Figures/Metabolomics/metabolite_pool_vs_enrichment
Mcap2021/Figures/Metabolomics/position_plots
Mcap2021/Figures/Metabolomics/enrichment_vs_labeling
Mcap2021/Figures/Metabolomics/label_prop_plots
Mcap2021/Figures/Metabolomics/enrichment_plots
Mcap2021/Figures/Metabolomics/abundance_plots
Mcap2021/Figures/Metabolomics/timeseries_validation/enrichment_plots
Mcap2021/Figures/Metabolomics/timeseries_validation/pool_size_plots
Mcap2021/Figures/Metabolomics/timeseries_validation/pacuta_fraction_enrichment_plots
Mcap2021/Figures/Metabolomics/timeseries_validation/pacuta_fraction_poolsize_plots
#custom figures
Mcap2021/Figures/Custom_Figures
Mcap2021/Figures/Final_Figures