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strain.metadata.txt
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biosample BioProject Organism run Assay Type AvgSpotLen pre_filtering_bases Instrument LibraryLayout ReleaseDate assembly_filename post_filt_total_reads post_filt_total_bases pre_spades_assembly pre_skesa_assembly post_spades post_skesa snp del ins het unaligned
SAMN16357501 PRJNA231221 Acinetobacter baumannii SRR13674445 WGS 302 2515110964 Illumina NovaSeq 6000 PAIRED 2021-02-10T00:00:00Z GCF_016903215.1_ASM1690321v1 14407136 2175477536 PASS PASS PASS PASS 0 0 0 39 62335
SAMN16357502 PRJNA231221 Acinetobacter baumannii SRR13674446 WGS 302 2449342612 Illumina NovaSeq 6000 PAIRED 2021-02-10T00:00:00Z GCF_016903135.1_ASM1690313v1 14100670 2129201170 PASS PASS PASS PASS 0 0 0 45 77810
SAMN16357205 PRJNA231221 Acinetobacter baumannii SRR12825852 WGS 302 2563616694 Illumina HiSeq 4000 PAIRED 2020-10-18T00:00:00Z GCF_016127515.1_ASM1612751v1 15146220 2287079220 PASS PASS PASS PASS 0 0 0 240 99640
SAMN10163228 PRJNA231221 Acinetobacter baumannii SRR8180477 WGS 302 3435888730 Illumina HiSeq 4000 PAIRED 2018-11-09T00:00:00Z GCF_003812385.1_ASM381238v1 20082386 3032440286 PASS PASS PASS PASS 68 0 2 20 110833
SAMN10163233 PRJNA231221 Acinetobacter baumannii SRR8180786 WGS 302 2366493442 Illumina HiSeq 4000 PAIRED 2018-11-09T00:00:00Z GCF_003812065.1_ASM381206v1 14089102 2127454402 PASS PASS PASS PASS 34 0 1 55 184628
SAMN03455926 PRJNA279607 Aeromonas veronii SRR3465535 WGS 600 1392800400 Illumina MiSeq PAIRED 2016-06-18T00:00:00Z GCF_001634325.1_ASM163432v1 2880948 864284400 PASS PASS PASS PASS 0 0 0 215 145784
SAMN04014863 PRJNA292901 Citrobacter freundii SRR3112272 WGS 202 502687100 Illumina HiSeq 2500 PAIRED 2016-01-21T00:00:00Z GCF_002796505.1_ASM279650v1 4834254 488259654 PASS PASS PASS PASS 0 0 0 239 65118
SAMN02713684 PRJNA202883 Citrobacter freundii SRR1284629 WGS 400 632560000 Illumina MiSeq PAIRED 2014-05-13T00:00:00Z GCF_000648515.1_ASM64851v1 2550988 510197600 PASS PASS PASS PASS 0 2 2 5225 92219
SAMN03733754 PRJNA353060 Citrobacter freundii SRR5713999 WGS 563 1132132062 Illumina MiSeq SINGLE 2017-06-20T00:00:00Z GCF_001022275.1_ASM102227v1 2668012 745479240 PASS PASS PASS PASS 0 0 0 287 104462
SAMN03733741 PRJNA246471 Citrobacter freundii SRR2965690 WGS 302 382812482 Illumina HiSeq 2000 PAIRED 2015-12-05T00:00:00Z GCF_001022155.1_ASM102215v1 2433536 367463936 PASS PASS PASS PASS 0 0 0 4302 130655
SAMN16357574 PRJNA231221 Enterobacter asburiae SRR15075451 WGS 302 3096880744 Illumina NovaSeq 6000 PAIRED 2021-07-08T00:00:00Z GCF_019048485.1_ASM1904848v1 15737174 2376313274 PASS PASS PASS PASS 0 0 0 373 65865
SAMN03733641 PRJNA246471 Enterobacter asburiae SRR2965752 WGS 302 334354770 Illumina HiSeq 2000 PAIRED 2015-12-06T00:00:00Z GCF_001022095.1_ASM102209v1 2115398 319425098 PASS PASS PASS PASS 0 0 0 4639 131628
SAMN16357569 PRJNA231221 Enterobacter bugandensis SRR15075415 WGS 302 4224605822 Illumina NovaSeq 6000 PAIRED 2021-07-08T00:00:00Z GCF_019046905.1_ASM1904690v1 21008114 3172225214 PASS PASS PASS PASS 0 0 0 329 83876
SAMN16357570 PRJNA231221 Enterobacter cancerogenus SRR15075446 WGS 302 2501569586 Illumina NovaSeq 6000 PAIRED 2021-07-08T00:00:00Z GCF_019047785.1_ASM1904778v1 13288974 2006635074 PASS PASS PASS PASS 0 4 0 266 41068
SAMN11056357 PRJNA231221 Enterobacter cloacae SRR8984857 WGS 302 1727378694 Illumina HiSeq 4000 PAIRED 2019-04-29T00:00:00Z GCF_008693905.1_ASM869390v1 9922044 1498228644 PASS PASS PASS PASS 0 0 0 82 38792
SAMN02934530 PRJNA231221 Enterobacter cloacae SRR1609081 WGS 202 1149710674 Illumina HiSeq 2000 PAIRED 2014-10-09T00:00:00Z GCF_000783675.2_ASM78367v2 10954482 1106402682 PASS PASS PASS PASS 0 0 0 256 128063
SAMN16357573 PRJNA231221 Enterobacter cloacae SRR15075450 WGS 302 4535197420 Illumina NovaSeq 6000 PAIRED 2021-07-08T00:00:00Z GCF_019047105.1_ASM1904710v1 22269454 3362687554 PASS PASS PASS PASS 0 0 0 307 169895
SAMN16357576 PRJNA231221 Enterobacter hormaechei SRR15075461 WGS 302 3249296218 Illumina NovaSeq 6000 PAIRED 2021-07-08T00:00:00Z GCF_019047945.1_ASM1904794v1 16914152 2554036952 PASS PASS PASS PASS 0 0 0 285 42514
SAMN16357247 PRJNA231221 Enterobacter hormaechei SRR12931606 WGS 302 2397453274 Illumina HiSeq 4000 PAIRED 2020-10-29T00:00:00Z GCF_016725825.1_ASM1672582v1 14100224 2129133824 PASS PASS PASS PASS 0 0 0 46 59201
SAMN16357577 PRJNA231221 Enterobacter hormaechei SRR15075463 WGS 302 4119062560 Illumina NovaSeq 6000 PAIRED 2021-07-08T00:00:00Z GCF_019048625.1_ASM1904862v1 21183278 3198674978 PASS PASS PASS PASS 0 0 0 157 60542
SAMN02713646 PRJNA202892 Enterobacter hormaechei SRR1576808 WGS 400 634463200 Illumina MiSeq PAIRED 2014-09-19T00:00:00Z GCF_000750275.1_ASM75027v1 2436958 487391600 PASS PASS PASS PASS 0 0 0 6226 73363
SAMN03733769 PRJNA353060 Enterobacter hormaechei SRR5713996 WGS 514 773182753 Illumina MiSeq SINGLE 2017-06-20T00:00:00Z GCF_001022075.1_ASM102207v1 2501546 625617147 PASS PASS PASS PASS 0 0 0 570 76677
SAMN03733727 PRJNA246471 Enterobacter hormaechei SRR2965806 WGS 302 370998846 Illumina HiSeq 2000 PAIRED 2015-12-06T00:00:00Z GCF_001874505.1_ASM187450v1 2341038 353496738 PASS PASS PASS PASS 0 0 0 4757 79707
SAMN03733830 PRJNA246471 Enterobacter hormaechei SRR2965616 WGS 302 486084100 Illumina HiSeq 2000 PAIRED 2015-12-06T00:00:00Z GCF_001022255.1_ASM102225v1 2812420 424675420 PASS PASS PASS PASS 0 0 0 4253 79770
SAMN03733748 PRJNA246471 Enterobacter hormaechei SRR2965815 WGS 302 527865800 Illumina HiSeq 2000 PAIRED 2015-12-06T00:00:00Z GCF_001022015.1_ASM102201v1 3097278 467688978 PASS PASS PASS PASS 0 0 0 5956 79777
SAMN03733827 PRJNA246471 Enterobacter hormaechei SRR2965612 WGS 302 512700568 Illumina HiSeq 2000 PAIRED 2015-12-06T00:00:00Z GCF_001022055.1_ASM102205v1 2981284 450173884 PASS PASS PASS PASS 0 0 0 4338 88323
SAMN02713683 PRJNA202894 Enterobacter hormaechei SRR1576778 WGS 400 641331200 Illumina MiSeq PAIRED 2014-09-19T00:00:00Z GCF_000750225.1_ASM75022v1 2557968 511593600 PASS PASS PASS PASS 0 0 2 5412 94091
SAMN16357572 PRJNA231221 Enterobacter roggenkampii SRR15075448 WGS 302 4883992320 Illumina NovaSeq 6000 PAIRED 2021-07-08T00:00:00Z GCF_019047025.1_ASM1904702v1 24276624 3665770224 PASS PASS PASS PASS 0 0 0 281 91035
SAMN10163217 PRJNA231221 Enterobacter roggenkampii SRR8180306 WGS 302 6453736678 Illumina HiSeq 4000 PAIRED 2018-11-09T00:00:00Z GCF_003812145.1_ASM381214v1 29980904 4527116504 PASS PASS PASS PASS 4 2 1 181 143419
SAMN06173336 PRJNA231221 Enterococcus faecium SRR5419825 WGS 202 1195626890 Illumina HiSeq 2500 PAIRED 2017-04-05T00:00:00Z GCF_002983785.1_ASM298378v1 11603710 1171974710 PASS PASS PASS PASS 3 0 0 174 76229
SAMN03339922 PRJNA275194 Enterococcus faecium SRR2120261 WGS 379 345854323 Illumina MiSeq PAIRED 2016-06-12T00:00:00Z GCF_001587115.1_ASM158711v1 1653790 310531307 PASS PASS PASS PASS 6 0 2 3940 78986
SAMN03996308 PRJNA231221 Enterococcus sp. SRR2822449 WGS 202 1024091318 Illumina HiSeq 2500 PAIRED 2015-10-27T00:00:00Z GCF_001558875.2_ASM155887v2 10019748 1011994548 PASS PASS PASS PASS 0 0 0 96 28932
SAMN05511179 PRJNA316786 Escherichia coli SRR3999067 WGA 602 1109856230 Illumina MiSeq PAIRED 2017-02-28T00:00:00Z GCF_002012005.1_ASM201200v1 1346918 405421718 PASS PASS PASS PASS 0 0 2 1195 55380
SAMN02147037 PRJNA230969 Escherichia coli SRR2533563 WGS 455 737272648 Illumina MiSeq PAIRED 2015-10-01T00:00:00Z GCF_000464955.2_ASM46495v2 2154536 472292649 PASS PASS PASS PASS 2 0 0 12467 64825
SAMN05511182 PRJNA316786 Escherichia coli SRR3999064 WGA 602 1026615282 Illumina MiSeq PAIRED 2017-02-28T00:00:00Z GCF_002012105.1_ASM201210v1 1367842 411719842 PASS PASS PASS PASS 1 1 1 1652 71701
SAMN04625459 PRJNA218110 Escherichia coli SRR3360246 WGS 502 977026034 Illumina HiSeq 2500 PAIRED 2016-04-12T00:00:00Z GCF_002741555.1_ASM274155v1 3441464 863807464 PASS PASS PASS PASS 1 9 63 223 78309
SAMD00056131 PRJDB5007 Escherichia coli DRR065947 WGS 600 698712600 Illumina MiSeq PAIRED 2017-04-06T00:00:00Z GCF_002357895.1_ASM235789v1 1035176 310552202 PASS PASS PASS PASS 0 0 11 10406 90759
SAMN04159541 PRJNA297860 Escherichia coli SRR2970646 WGS 200 319075000 Illumina HiSeq 2000 PAIRED 2015-12-08T00:00:00Z GCF_001469815.1_ASM146981v1 3140104 314010400 PASS PASS PASS PASS 0 0 42 594 101599
SAMN02949643 PRJNA46529 Escherichia coli SRR3492218 WGS 202 808000000 Illumina HiScanSQ PAIRED 2016-05-15T00:00:00Z GCF_000829985.1_ASM82998v1 7082234 715305634 PASS PASS PASS PASS 4 2 0 584 105620
SAMN04578538 PRJNA218110 Escherichia coli SRR3290448 WGS 502 706762788 Illumina HiSeq 2500 PAIRED 2016-03-24T00:00:00Z GCF_002741175.1_ASM274117v1 2487358 624326858 PASS PASS PASS PASS 0 85 5 552 105919
SAMN04014860 PRJNA292901 Escherichia coli SRR3112270 WGS 202 542969536 Illumina HiSeq 2500 PAIRED 2016-01-21T00:00:00Z GCF_002796445.1_ASM279644v1 5220206 527240806 PASS PASS PASS PASS 0 0 0 131 106979
SAMN04621488 PRJNA218110 Escherichia coli SRR3341739 WGS 502 687179266 Illumina HiSeq 2500 PAIRED 2016-04-06T00:00:00Z GCF_002741335.1_ASM274133v1 2150836 539859836 PASS PASS PASS PASS 0 16 4 3325 110869
SAMN04014855 PRJNA292901 Escherichia coli SRR3112265 WGS 202 633191624 Illumina HiSeq 2500 PAIRED 2016-01-21T00:00:00Z GCF_002787315.1_ASM278731v1 6099886 616088286 PASS PASS PASS PASS 0 0 0 202 118975
SAMN05414625 PRJNA312475 Escherichia coli SRR3931165 WGS 379 473974259 Illumina MiSeq PAIRED 2016-07-24T00:00:00Z GCF_002105735.1_ASM210573v1 2273360 424308659 PASS PASS PASS PASS 0 2 1 11731 139949
SAMN02991226 PRJNA218110 Escherichia coli SRR2014925 WGS 485 254974084 Illumina MiSeq PAIRED 2015-05-14T00:00:00Z GCF_001420955.1_ASM142095v1 852926 205943944 PASS PASS PASS PASS 3 19 1 50171 145129
SAMN04014852 PRJNA292901 Escherichia coli SRR3112262 WGS 202 536861056 Illumina HiSeq 2500 PAIRED 2016-01-21T00:00:00Z GCF_002788295.1_ASM278829v1 5161538 521315138 PASS PASS PASS PASS 2 0 1 237 147307
SAMN04014847 PRJNA292901 Escherichia coli SRR3112258 WGS 202 780022798 Illumina HiSeq 2500 PAIRED 2016-01-21T00:00:00Z GCF_002787215.1_ASM278721v1 7527464 760273864 PASS PASS PASS PASS 1 0 4 209 153430
SAMN04014856 PRJNA292901 Escherichia coli SRR3112266 WGS 202 485632240 Illumina HiSeq 2500 PAIRED 2016-01-21T00:00:00Z GCF_002788115.1_ASM278811v1 4678730 472551730 PASS PASS PASS PASS 0 0 0 214 155907
SAMN04014858 PRJNA292901 Escherichia coli SRR3112268 WGS 202 471484766 Illumina HiSeq 2500 PAIRED 2016-01-21T00:00:00Z GCF_002796585.1_ASM279658v1 4529616 457491216 PASS PASS PASS PASS 0 0 2 214 177662
SAMN05368232 PRJNA218110 Escherichia coli SRR3793744 WGS 502 646289860 Illumina HiSeq 2500 PAIRED 2016-07-08T00:00:00Z GCF_002741155.1_ASM274115v1 2210386 554806886 PASS PASS PASS PASS 0 2 28 540 188537
SAMN03733745 PRJNA246471 Klebsiella aerogenes SRR2965748 WGS 302 357561658 Illumina HiSeq 2000 PAIRED 2015-12-05T00:00:00Z GCF_001021995.1_ASM102199v1 2255974 340652074 PASS PASS PASS PASS 0 0 0 4951 44301
SAMN04014850 PRJNA292901 Klebsiella aerogenes SRR3112260 WGS 202 582927358 Illumina HiSeq 2500 PAIRED 2016-01-21T00:00:00Z GCF_002796525.1_ASM279652v1 5601080 565709080 PASS PASS PASS PASS 0 0 0 208 51506
SAMN03996283 PRJNA231221 Klebsiella aerogenes SRR2820618 WGS 202 790183196 Illumina HiSeq 2000 PAIRED 2015-10-26T00:00:00Z GCF_001593585.2_ASM159358v2 6256494 631905894 PASS PASS PASS PASS 0 0 0 441 103271
SAMN03733631 PRJNA353060 Klebsiella oxytoca SRR5713997 WGS 470 1047814635 Illumina MiSeq SINGLE 2017-06-20T00:00:00Z GCF_001870185.1_ASM187018v1 3155396 717987718 PASS PASS PASS PASS 0 0 0 1081 105588
SAMN03733848 PRJNA246471 Klebsiella oxytoca SRR2965667 WGS 302 700047778 Illumina HiSeq 2000 PAIRED 2015-12-05T00:00:00Z GCF_001970835.1_ASM197083v1 4010108 605526008 PASS PASS PASS PASS 0 0 0 6244 141753
SAMN03733663 PRJNA246471 Klebsiella oxytoca SRR2965639 WGS 302 510855952 Illumina HiSeq 2000 PAIRED 2015-12-05T00:00:00Z GCF_001022295.1_ASM102229v1 2951102 445616402 PASS PASS PASS PASS 0 0 0 6536 160172
SAMN02786843 PRJNA202895 Klebsiella oxytoca SRR1501122 WGS 400 612909600 Illumina MiSeq PAIRED 2014-07-01T00:00:00Z GCF_000714655.1_ASM71465v1 2422122 484424400 PASS PASS PASS PASS 0 0 2 9815 184894
SAMN11056346 PRJNA231221 Klebsiella pneumoniae SRR8984908 WGS 302 3337684068 Illumina HiSeq 4000 PAIRED 2019-04-29T00:00:00Z GCF_008693425.1_ASM869342v1 19588482 2957860782 PASS PASS PASS PASS 0 0 8 77 49622
SAMN04448241 PRJNA296771 Klebsiella pneumoniae SRR3222213 WGS 473 890217774 Illumina MiSeq PAIRED 2016-03-29T00:00:00Z GCF_001709295.1_ASM170929v1 3235278 762185681 PASS PASS PASS PASS 0 1 49 8160 50749
SAMN16357459 PRJNA231221 Klebsiella pneumoniae SRR13674229 WGS 302 2563804538 Illumina NovaSeq 6000 PAIRED 2021-02-09T00:00:00Z GCF_016903755.1_ASM1690375v1 15558554 2349341654 PASS PASS PASS PASS 0 0 0 155 50897
SAMN16357454 PRJNA231221 Klebsiella pneumoniae SRR13674006 WGS 302 3079369576 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903495.1_ASM1690349v1 17208814 2598530914 PASS PASS PASS PASS 0 0 0 282 52091
SAMN16357448 PRJNA231221 Klebsiella pneumoniae SRR13673973 WGS 302 3059170004 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016904295.1_ASM1690429v1 17719552 2675652352 PASS PASS PASS PASS 0 0 0 234 52242
SAMN16357471 PRJNA231221 Klebsiella pneumoniae SRR13668426 WGS 302 2452450192 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903875.1_ASM1690387v1 12152956 1835096356 PASS PASS PASS PASS 0 0 0 270 53637
SAMEA3357328 PRJEB6891 Klebsiella pneumoniae ERR1023631 WGS 250 751400750 Illumina HiSeq 2000 PAIRED 2015-09-23T00:00:00Z GCF_002752905.1_ASM275290v1 5919758 739969750 PASS PASS PASS PASS 0 0 0 157 53786
SAMN16357465 PRJNA231221 Klebsiella pneumoniae SRR13674404 WGS 302 2301980806 Illumina NovaSeq 6000 PAIRED 2021-02-10T00:00:00Z GCF_016903295.1_ASM1690329v1 13835566 2089170466 PASS PASS PASS PASS 0 1 0 11651 54729
SAMN16357450 PRJNA231221 Klebsiella pneumoniae SRR13673976 WGS 302 2305721076 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903795.1_ASM1690379v1 13253588 2001291788 PASS PASS PASS PASS 0 0 0 218 54837
SAMN16357472 PRJNA231221 Klebsiella pneumoniae SRR13668438 WGS 302 1980403354 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903515.1_ASM1690351v1 9408904 1420744504 PASS PASS PASS PASS 0 0 0 42962 54869
SAMN16357462 PRJNA231221 Klebsiella pneumoniae SRR13674235 WGS 302 2392392358 Illumina NovaSeq 6000 PAIRED 2021-02-09T00:00:00Z GCF_016904635.1_ASM1690463v1 14521200 2192701200 PASS PASS PASS PASS 0 0 0 141 56829
SAMN16357452 PRJNA231221 Klebsiella pneumoniae SRR13674001 WGS 302 3272725076 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016904595.1_ASM1690459v1 18352672 2771253472 PASS PASS PASS PASS 1 0 0 243 58785
SAMN16357460 PRJNA231221 Klebsiella pneumoniae SRR13674231 WGS 302 2846770686 Illumina NovaSeq 6000 PAIRED 2021-02-09T00:00:00Z GCF_016903455.1_ASM1690345v1 17282634 2609677734 PASS PASS PASS PASS 0 0 0 159 59186
SAMN16357461 PRJNA231221 Klebsiella pneumoniae SRR13674233 WGS 302 3038276436 Illumina NovaSeq 6000 PAIRED 2021-02-09T00:00:00Z GCF_016904095.1_ASM1690409v1 18336790 2768855290 PASS PASS PASS PASS 0 0 0 133 63051
SAMN16357458 PRJNA231221 Klebsiella pneumoniae SRR13674215 WGS 302 1941923722 Illumina NovaSeq 6000 PAIRED 2021-02-09T00:00:00Z GCF_016904315.1_ASM1690431v1 11681278 1763872978 PASS PASS PASS PASS 0 0 0 311 64272
SAMN16357463 PRJNA231221 Klebsiella pneumoniae SRR13674237 WGS 302 2524505278 Illumina NovaSeq 6000 PAIRED 2021-02-09T00:00:00Z GCF_016903895.1_ASM1690389v1 15287366 2308392266 PASS PASS PASS PASS 0 0 0 97 65453
SAMN02786856 PRJNA198784 Klebsiella pneumoniae SRR1510963 WGS 400 676933200 Illumina MiSeq PAIRED 2014-07-11T00:00:00Z GCF_000717515.1_ASM71751v1 2597036 519407200 PASS PASS PASS PASS 1 0 0 8222 68492
SAMN11056344 PRJNA231221 Klebsiella pneumoniae SRR8984904 WGS 302 3737317044 Illumina HiSeq 4000 PAIRED 2019-04-29T00:00:00Z GCF_008693445.1_ASM869344v1 21869500 3302294500 PASS PASS PASS PASS 0 0 0 160 70659
SAMN03024573 PRJNA246471 Klebsiella pneumoniae SRR1582858 WGS 302 528612042 Illumina HiSeq 2000 PAIRED 2015-01-27T00:00:00Z GCF_001870165.1_ASM187016v1 3011694 454765794 PASS PASS PASS PASS 0 0 0 8645 71319
SAMN16357453 PRJNA231221 Klebsiella pneumoniae SRR13674003 WGS 302 2737907236 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903255.1_ASM1690325v1 15402546 2325784446 PASS PASS PASS PASS 0 0 0 288 74326
SAMN16357451 PRJNA231221 Klebsiella pneumoniae SRR13673978 WGS 302 2694894282 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903955.1_ASM1690395v1 15488176 2338714576 PASS PASS PASS PASS 16 0 0 278 75739
SAMEA3357043 PRJEB6891 Klebsiella pneumoniae ERR1023792 WGS 250 768613000 Illumina HiSeq 2000 PAIRED 2015-09-23T00:00:00Z GCF_002753355.1_ASM275335v1 6060068 757508500 PASS PASS PASS PASS 0 0 0 91 77334
SAMEA3357010 PRJEB6891 Klebsiella pneumoniae ERR1023775 WGS 250 667734000 Illumina HiSeq 2000 PAIRED 2015-09-23T00:00:00Z GCF_002752995.1_ASM275299v1 5262320 657789752 PASS PASS PASS PASS 0 0 0 100 77833
SAMN16357464 PRJNA231221 Klebsiella pneumoniae SRR13674429 WGS 302 2316717500 Illumina NovaSeq 6000 PAIRED 2021-02-10T00:00:00Z GCF_016904035.1_ASM1690403v1 14070424 2124634024 PASS PASS PASS PASS 0 0 0 159 82807
SAMN03733793 PRJNA246471 Klebsiella pneumoniae SRR2965692 WGS 302 705186610 Illumina HiSeq 2000 PAIRED 2015-12-05T00:00:00Z GCF_001902255.1_ASM190225v1 3972918 599910618 PASS PASS PASS PASS 0 0 0 5856 86176
SAMN03024583 PRJNA353060 Klebsiella pneumoniae SRR5714002 WGS 480 1137177837 Illumina MiSeq SINGLE 2017-06-20T00:00:00Z GCF_001022235.1_ASM102223v1 3614954 848036960 PASS PASS PASS PASS 2 0 0 666 86466
SAMN11056490 PRJNA231221 Klebsiella pneumoniae SRR9641577 WGS 302 4305266700 Illumina HiSeq 4000 PAIRED 2019-07-03T00:00:00Z GCF_006364295.1_ASM636429v1 20079766 3032044666 PASS PASS PASS PASS 0 0 1 173 88081
SAMN16357468 PRJNA231221 Klebsiella pneumoniae SRR13668390 WGS 302 2894006506 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903155.1_ASM1690315v1 14077596 2125716996 PASS PASS PASS PASS 5 0 0 7846 94372
SAMN11056345 PRJNA231221 Klebsiella pneumoniae SRR8984905 WGS 302 2711760680 Illumina HiSeq 4000 PAIRED 2019-04-29T00:00:00Z GCF_008693405.1_ASM869340v1 15885908 2398772108 PASS PASS PASS PASS 0 0 2 50 94852
SAMN03024585 PRJNA246471 Klebsiella pneumoniae SRR1582870 WGS 302 303164210 Illumina HiSeq 2000 PAIRED 2015-01-27T00:00:00Z GCF_001908715.1_ASM190871v1 1660882 250792882 PASS PASS PASS PASS 0 7 32 24993 97615
SAMEA3357223 PRJEB6891 Klebsiella pneumoniae ERR1008714 WGS 250 785126000 Illumina HiSeq 2000 PAIRED 2015-09-09T00:00:00Z GCF_002752775.1_ASM275277v1 6149284 768660500 PASS PASS PASS PASS 23 2 0 116 98099
SAMN16357467 PRJNA231221 Klebsiella pneumoniae SRR13668388 WGS 302 2416651414 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903735.1_ASM1690373v1 11968096 1807182496 PASS PASS PASS PASS 0 0 0 311 98540
SAMN03024576 PRJNA246471 Klebsiella pneumoniae SRR1582861 WGS 302 332749640 Illumina HiSeq 2000 PAIRED 2015-01-27T00:00:00Z GCF_001908515.1_ASM190851v1 1833772 276899272 PASS PASS PASS PASS 0 0 0 8796 99805
SAMN03024610 PRJNA246471 Klebsiella pneumoniae SRR1582895 WGS 302 561059828 Illumina HiSeq 2000 PAIRED 2015-01-27T00:00:00Z GCF_001022035.1_ASM102203v1 3201958 483495358 PASS PASS PASS PASS 0 0 0 8061 101825
SAMN16357449 PRJNA231221 Klebsiella pneumoniae SRR13673975 WGS 302 2296090296 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903775.1_ASM1690377v1 12586630 1900581130 PASS PASS PASS PASS 2 1 0 309 101880
SAMN04158282 PRJNA295003 Klebsiella pneumoniae SRR2724081 WGS 543 2425380237 Illumina MiSeq PAIRED 2015-10-24T00:00:00Z GCF_002113865.1_ASM211386v1 6082184 1595180924 PASS PASS PASS PASS 0 0 0 63 103306
SAMN16357245 PRJNA231221 Klebsiella pneumoniae SRR12931584 WGS 302 3245126806 Illumina HiSeq 4000 PAIRED 2020-10-29T00:00:00Z GCF_016727425.1_ASM1672742v1 19439616 2935382016 PASS PASS PASS PASS 0 0 0 237 106667
SAMN16357466 PRJNA231221 Klebsiella pneumoniae SRR13668104 WGS 302 2261788532 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903235.1_ASM1690323v1 10139332 1531039132 PASS PASS PASS PASS 9 0 1 35628 109731
SAMN16357470 PRJNA231221 Klebsiella pneumoniae SRR13668412 WGS 302 2020057162 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016904275.1_ASM1690427v1 10099024 1524952624 PASS PASS PASS PASS 0 0 0 338 116828
SAMN04448219 PRJNA296771 Klebsiella pneumoniae SRR3219268 WGS 500 650075500 Illumina MiSeq PAIRED 2016-03-29T00:00:00Z GCF_001704235.1_ASM170423v1 1534892 383723000 PASS PASS PASS PASS 0 2 7 18349 120798
SAMN03996301 PRJNA231221 Klebsiella pneumoniae SRR2821776 WGS 202 1028741762 Illumina HiSeq 2500 PAIRED 2015-10-27T00:00:00Z GCF_002951635.1_ASM295163v1 9964878 1006452678 PASS PASS PASS PASS 0 0 0 315 127866
SAMN01057614 PRJNA73843 Klebsiella pneumoniae SRR1427234 WGS 400 612946000 Illumina MiSeq PAIRED 2014-06-20T00:00:00Z GCF_000281435.2_ASM28143v2 1116340 223268000 PASS PASS PASS PASS 0 3 0 35430 129957
SAMN07312483 PRJNA231221 Klebsiella pneumoniae SRR5884793 WGS 302 2776689774 Illumina HiSeq 4000 PAIRED 2017-07-31T00:00:00Z GCF_002591075.1_ASM259107v1 13675964 2065070564 PASS PASS PASS PASS 0 0 0 39 133657
SAMN07312490 PRJNA231221 Klebsiella pneumoniae SRR5884863 WGS 302 1971131652 Illumina HiSeq 4000 PAIRED 2017-07-31T00:00:00Z GCF_002587885.1_ASM258788v1 10349734 1562809834 PASS PASS PASS PASS 1 0 0 231 137781
SAMEA3357272 PRJEB6891 Klebsiella pneumoniae ERR1008737 WGS 250 658811500 Illumina HiSeq 2000 PAIRED 2015-09-09T00:00:00Z GCF_002752975.1_ASM275297v1 5194276 649284500 PASS PASS PASS PASS 1 0 0 117 143514
SAMEA3357080 PRJEB6891 Klebsiella pneumoniae ERR1023801 WGS 250 722686000 Illumina HiSeq 2000 PAIRED 2015-09-23T00:00:00Z GCF_002753055.1_ASM275305v1 5695528 711941000 PASS PASS PASS PASS 0 0 0 81 149122
SAMEA3357268 PRJEB6891 Klebsiella pneumoniae ERR1008735 WGS 250 761606250 Illumina HiSeq 2000 PAIRED 2015-09-09T00:00:00Z GCF_002753605.1_ASM275360v1 5996640 749580000 PASS PASS PASS PASS 0 0 0 127 149758
SAMEA3357077 PRJEB6891 Klebsiella pneumoniae ERR1023800 WGS 250 691253500 Illumina HiSeq 2000 PAIRED 2015-09-23T00:00:00Z GCF_002753075.1_ASM275307v1 5446568 680821000 PASS PASS PASS PASS 0 0 0 106 150144
SAMN07312488 PRJNA231221 Klebsiella pneumoniae SRR5884857 WGS 302 2950771332 Illumina HiSeq 4000 PAIRED 2017-07-31T00:00:00Z GCF_002587165.1_ASM258716v1 14679594 2216618694 PASS PASS PASS PASS 3 1 1 357 153363
SAMN10163190 PRJNA231221 Klebsiella pneumoniae SRR8179066 WGS 302 2868294528 Illumina HiSeq 4000 PAIRED 2018-11-09T00:00:00Z GCF_003812085.1_ASM381208v1 16270770 2456886270 PASS PASS PASS PASS 5 0 9 100 157074
SAMN16357455 PRJNA231221 Klebsiella pneumoniae SRR13674008 WGS 302 4109747068 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903395.1_ASM1690339v1 22478998 3394328698 PASS PASS PASS PASS 0 1 0 458 159709
SAMN16357456 PRJNA231221 Klebsiella pneumoniae SRR13674019 WGS 302 3711356218 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016904415.1_ASM1690441v1 20728836 3130054236 PASS PASS PASS PASS 4 0 0 341 163438
SAMN02885365 PRJNA253300 Klebsiella pneumoniae SRR1508819 WGA 200 333799600 Illumina HiSeq 2000 PAIRED 2014-10-08T00:00:00Z GCF_000764615.1_ASM76461v1 3200402 320040200 PASS PASS PASS PASS 0 11 2 1227 166669
SAMN16357457 PRJNA231221 Klebsiella pneumoniae SRR13674212 WGS 302 4036901648 Illumina HiSeq 4000 PAIRED 2021-02-09T00:00:00Z GCF_016903475.1_ASM1690347v1 22273896 3363358296 PASS PASS PASS PASS 2 0 0 419 169690
SAMN03733725 PRJNA246471 Klebsiella pneumoniae SRR2965672 WGS 302 388904124 Illumina HiSeq 2000 PAIRED 2015-12-05T00:00:00Z GCF_001456135.1_ASM145613v1 2202226 332535826 PASS PASS PASS PASS 0 0 0 9437 171126
SAMN04011439 PRJNA287968 Klebsiella pneumoniae SRR2244257 WGS 602 349991964 Illumina MiSeq PAIRED 2015-09-15T00:00:00Z GCF_001316945.3_ASM131694v3 682132 205321132 PASS PASS PASS PASS 0 0 6 8030 179963
SAMN03733692 PRJNA246471 Kluyvera intermedia SRR2965721 WGS 302 379914490 Illumina HiSeq 2000 PAIRED 2015-12-07T00:00:00Z GCF_001022135.1_ASM102213v1 2239558 338173258 PASS PASS PASS PASS 0 0 0 6156 174596
SAMN02904571 PRJNA244575 Providencia stuartii SRR1558175 WGS 202 2692100056 Illumina HiSeq 2000 PAIRED 2014-08-28T00:00:00Z GCF_000754345.1_ASM75434v1 18826644 1901491044 PASS PASS PASS PASS 1 0 24 187 79267
SAMN10346774 PRJNA231221 Pseudomonas aeruginosa SRR9160467 WGS 302 2765851296 Illumina HiSeq 4000 PAIRED 2019-05-30T00:00:00Z GCF_006364795.1_ASM636479v1 15123562 2283657862 PASS PASS PASS PASS 0 0 0 231 50190
SAMN11056482 PRJNA231221 Pseudomonas aeruginosa SRR9641503 WGS 302 1344206228 Illumina HiSeq 4000 PAIRED 2019-07-03T00:00:00Z GCF_006364735.1_ASM636473v1 8089428 1221503628 PASS PASS PASS PASS 0 0 0 174 60362
SAMN10163227 PRJNA231221 Pseudomonas aeruginosa SRR8180474 WGS 302 4703211496 Illumina HiSeq 4000 PAIRED 2018-11-09T00:00:00Z GCF_003812165.1_ASM381216v1 22599164 3412473764 PASS PASS PASS PASS 18 0 1 986 98576
SAMN10163199 PRJNA231221 Pseudomonas aeruginosa SRR8179283 WGS 302 8408278866 Illumina HiSeq 4000 PAIRED 2018-11-09T00:00:00Z GCF_003813005.1_ASM381300v1 36430758 5501044458 PASS PASS PASS PASS 6 0 1 53 100194
SAMN16357210 PRJNA231221 Pseudomonas aeruginosa SRR12825839 WGS 302 2325824612 Illumina HiSeq 4000 PAIRED 2020-10-18T00:00:00Z GCF_016126955.1_ASM1612695v1 13542090 2044855590 PASS PASS PASS PASS 0 0 0 170 100554
SAMN10163177 PRJNA231221 Pseudomonas aeruginosa SRR8178086 WGS 302 2327198108 Illumina HiSeq 4000 PAIRED 2018-11-09T00:00:00Z GCF_003812905.1_ASM381290v1 13920174 2101946274 PASS PASS PASS PASS 0 0 0 141 107443
SAMN05277890 PRJNA298211 Salmonella enterica SRR3709728 WGS 537 393174350 Illumina MiSeq PAIRED 2016-06-27T00:00:00Z GCF_001692495.1_ASM169249v1 871762 219388079 PASS PASS PASS PASS 0 0 0 3919 37188
SAMN04156749 PRJNA298211 Salmonella enterica SRR2598330 WGS 497 382058383 Illumina MiSeq PAIRED 2016-01-29T00:00:00Z GCF_001441205.1_ASM144120v1 1198560 297606587 PASS PASS PASS PASS 0 0 0 20387 40504
SAMN05263553 PRJNA298211 Salmonella enterica SRR3707412 WGS 500 534330866 Illumina MiSeq PAIRED 2016-06-26T00:00:00Z GCF_001690055.1_ASM169005v1 1616542 404072404 PASS PASS PASS PASS 0 0 0 20308 40546
SAMN05263504 PRJNA298211 Salmonella enterica SRR3707415 WGS 497 626944818 Illumina MiSeq PAIRED 2016-06-26T00:00:00Z GCF_001690095.1_ASM169009v1 1173648 290253983 PASS PASS PASS PASS 0 0 0 31733 40618
SAMN04156727 PRJNA298211 Salmonella enterica SRR2896022 WGS 498 653201292 Illumina MiSeq PAIRED 2016-01-29T00:00:00Z GCF_001441225.1_ASM144122v1 2153082 535730306 PASS PASS PASS PASS 0 0 0 13045 42200
SAMN05263513 PRJNA298211 Salmonella enterica SRR3707447 WGS 497 623553004 Illumina MiSeq PAIRED 2016-06-26T00:00:00Z GCF_001690115.1_ASM169011v1 1367826 338690816 PASS PASS PASS PASS 0 0 0 22337 43928
SAMN04156715 PRJNA298211 Salmonella enterica SRR2898679 WGS 498 721415033 Illumina MiSeq PAIRED 2016-01-29T00:00:00Z GCF_001441245.1_ASM144124v1 2474412 615824954 PASS PASS PASS PASS 0 0 0 12774 48575
SAMN04334642 PRJNA305824 Salmonella enterica SRR3711252 WGS 202 2183301244 Illumina HiSeq 2500 PAIRED 2016-06-27T00:00:00Z GCF_001692535.1_ASM169253v1 16078630 1623941630 PASS PASS PASS PASS 0 0 0 1003 50479
SAMN04334640 PRJNA305824 Salmonella enterica SRR3711286 WGS 202 2504258034 Illumina HiSeq 2500 PAIRED 2016-06-28T00:00:00Z GCF_001692635.1_ASM169263v1 18069440 1825013440 PASS PASS PASS PASS 0 0 0 1048 50528
SAMN05263514 PRJNA298211 Salmonella enterica SRR3682071 WGS 202 1869090446 Illumina HiSeq 2500 PAIRED 2016-06-23T00:00:00Z GCF_001692595.1_ASM169259v1 13038038 1316841838 PASS PASS PASS PASS 0 0 0 986 50579
SAMN05263516 PRJNA298211 Salmonella enterica SRR3703041 WGA 202 1910823242 Illumina HiSeq 2500 PAIRED 2016-06-25T00:00:00Z GCF_001692515.1_ASM169251v1 13137032 1326840232 PASS PASS PASS PASS 0 0 0 981 50728
SAMN04334629 PRJNA305824 Salmonella enterica SRR3684173 WGS 202 2953844182 Illumina HiSeq 2500 PAIRED 2016-06-23T00:00:00Z GCF_001690005.1_ASM169000v1 4898822 494781022 PASS PASS PASS PASS 0 0 0 998 50750
SAMN05263517 PRJNA298211 Salmonella enterica SRR3703074 WGS 202 2235206962 Illumina HiSeq 2500 PAIRED 2016-06-25T00:00:00Z GCF_001692615.1_ASM169261v1 15343974 1549741374 PASS PASS PASS PASS 0 0 0 1019 50817
SAMN05263538 PRJNA298211 Salmonella enterica SRR3703080 WGS 202 2036294128 Illumina HiSeq 2500 PAIRED 2016-06-25T00:00:00Z GCF_001690075.1_ASM169007v1 15179810 1533160810 PASS PASS PASS PASS 0 1 0 1056 50839
SAMN04334633 PRJNA305824 Salmonella enterica SRR3684194 WGS 202 2222588224 Illumina HiSeq 2500 PAIRED 2016-06-23T00:00:00Z GCF_001689935.1_ASM168993v1 15061936 1521255536 PASS PASS PASS PASS 0 0 0 962 50864
SAMN05263515 PRJNA298211 Salmonella enterica SRR3685561 WGS 202 2389317206 Illumina HiSeq 2500 PAIRED 2016-06-23T00:00:00Z GCF_001692575.1_ASM169257v1 15852822 1601135022 PASS PASS PASS PASS 0 1 0 1089 51128
SAMN03702839 PRJNA242847 Salmonella enterica SRR2074998 WGS 298 393248699 NextSeq 500 PAIRED 2015-06-29T00:00:00Z GCF_002128365.1_ASM212836v1 2142690 319597298 PASS PASS PASS PASS 0 0 17 88144 55616
SAMN03988471 PRJNA292661 Salmonella enterica SRR2407791 WGS 545 412591748 Illumina MiSeq PAIRED 2015-09-16T00:00:00Z GCF_001931595.1_ASM193159v1 804922 204608250 PASS PASS PASS PASS 16 0 32 5721 70130
SAMN03996249 PRJNA231221 Salmonella enterica SRR2814420 WGS 202 657174478 Illumina HiSeq 2000 PAIRED 2015-10-26T00:00:00Z GCF_001558355.2_ASM155835v2 6347658 641113458 PASS PASS PASS PASS 0 0 0 358 81874
SAMN02800603 PRJNA186035 Salmonella enterica SRR1395326 WGS 455 507320495 Illumina MiSeq PAIRED 2014-06-13T00:00:00Z GCF_002196535.1_ASM219653v1 1653998 369612331 PASS PASS PASS PASS 0 0 1 28662 82063
SAMN04285042 PRJNA292666 Salmonella enterica SRR2939562 WGS 268 271499668 Illumina MiSeq PAIRED 2015-11-20T00:00:00Z GCF_001931555.1_ASM193155v1 1875572 250794310 PASS PASS PASS PASS 1 1 14 22874 84666
SAMN02568587 PRJNA161807 Salmonella enterica SRR3173804 WGS 469 526272803 Illumina MiSeq PAIRED 2016-02-16T00:00:00Z GCF_001612515.1_ASM161251v1 1991688 464791879 PASS PASS PASS PASS 0 0 4 16642 108003
SAMN03255481 PRJNA231221 Staphylococcus aureus SRR1955873 WGS 202 1380392048 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019535.2_ASM101953v2 13415452 1354960652 PASS PASS PASS PASS 4 0 0 47 32221
SAMN03255442 PRJNA231221 Staphylococcus aureus SRR1955495 WGS 202 1410568020 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018645.2_ASM101864v2 13664910 1380155910 PASS PASS PASS PASS 9 0 0 48 32299
SAMN07312456 PRJNA231221 Staphylococcus aureus SRR5878904 WGS 302 5212374738 Illumina HiSeq 4000 PAIRED 2017-07-28T00:00:00Z GCF_002386245.1_ASM238624v1 27214162 4109338462 PASS PASS PASS PASS 0 0 0 16 33354
SAMN03255482 PRJNA231221 Staphylococcus aureus SRR1955874 WGS 202 1200465800 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019125.2_ASM101912v2 11683306 1180013906 PASS PASS PASS PASS 3 0 0 46 33715
SAMN11056488 PRJNA231221 Staphylococcus aureus SRR9641573 WGS 302 3674013918 Illumina HiSeq 4000 PAIRED 2019-07-03T00:00:00Z GCF_006364675.1_ASM636467v1 18451310 2786147810 PASS PASS PASS PASS 16 0 0 118 35163
SAMN03255446 PRJNA231221 Staphylococcus aureus SRR1955590 WGS 202 1173033998 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019275.2_ASM101927v2 11386986 1150085586 PASS PASS PASS PASS 2 0 0 66 36842
SAMN16357387 PRJNA231221 Staphylococcus aureus SRR13182643 WGS 302 2439244638 Illumina NovaSeq 6000 PAIRED 2020-12-02T00:00:00Z GCF_016889945.1_ASM1688994v1 14383384 2171890984 PASS PASS PASS PASS 0 0 0 130 37648
SAMN03255466 PRJNA231221 Staphylococcus aureus SRR1955823 WGS 202 1640006084 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018915.2_ASM101891v2 15903844 1606288244 PASS PASS PASS PASS 0 0 0 71 37673
SAMN16357388 PRJNA231221 Staphylococcus aureus SRR13182647 WGS 302 3246357758 Illumina NovaSeq 6000 PAIRED 2020-12-02T00:00:00Z GCF_016889145.1_ASM1688914v1 19430240 2933966240 PASS PASS PASS PASS 0 0 0 25 38061
SAMN16357255 PRJNA231221 Staphylococcus aureus SRR12934882 WGS 302 3344534938 Illumina HiSeq 4000 PAIRED 2020-10-29T00:00:00Z GCF_016727585.1_ASM1672758v1 19599112 2959465912 PASS PASS PASS PASS 0 0 0 719 38450
SAMN03255451 PRJNA231221 Staphylococcus aureus SRR1955607 WGS 202 1496384286 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018735.2_ASM101873v2 14517744 1466292144 PASS PASS PASS PASS 0 0 0 69 38799
SAMN03255444 PRJNA231221 Staphylococcus aureus SRR1955581 WGS 202 1787568902 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018685.2_ASM101868v2 17373518 1754725318 PASS PASS PASS PASS 3 0 0 47 39635
SAMN03255487 PRJNA231221 Staphylococcus aureus SRR1955931 WGS 202 1374453450 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019205.2_ASM101920v2 13299724 1343272124 PASS PASS PASS PASS 0 0 0 272 39794
SAMN02700075 PRJNA231221 Staphylococcus aureus SRR1206476 WGS 202 2207251172 Illumina HiSeq 2000 PAIRED 2014-03-28T00:00:00Z GCF_000626615.2_ASM62661v3 21353796 2156733396 PASS PASS PASS PASS 0 0 0 92 39994
SAMN03255463 PRJNA231221 Staphylococcus aureus SRR1955816 WGS 202 1095202590 Illumina HiSeq 2500 PAIRED 2015-05-12T00:00:00Z GCF_001019415.2_ASM101941v2 10712888 1082001688 PASS PASS PASS PASS 80 0 0 66 43115
SAMN03255453 PRJNA231221 Staphylococcus aureus SRR1955613 WGS 202 1562233458 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018775.2_ASM101877v2 15176648 1532841448 PASS PASS PASS PASS 0 0 0 56 46162
SAMN03996304 PRJNA231221 Staphylococcus aureus SRR2822404 WGS 202 1330914572 Illumina HiSeq 2500 PAIRED 2015-10-27T00:00:00Z GCF_001558795.2_ASM155879v2 12924100 1305334100 PASS PASS PASS PASS 0 0 0 23 50162
SAMN03255445 PRJNA231221 Staphylococcus aureus SRR1955586 WGS 202 1133814082 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018655.2_ASM101865v2 11028378 1113866178 PASS PASS PASS PASS 0 0 0 75 55525
SAMN03255454 PRJNA231221 Staphylococcus aureus SRR1955616 WGS 202 1472233570 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018805.1_ASM101880v2 14303896 1444693496 PASS PASS PASS PASS 1 0 2 67 55543
SAMN03255464 PRJNA231221 Staphylococcus aureus SRR1955819 WGS 202 1163341028 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019435.2_ASM101943v2 11307300 1142037300 PASS PASS PASS PASS 0 0 0 56 58395
SAMN03255479 PRJNA231221 Staphylococcus aureus SRR1955869 WGS 202 1310411168 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019495.2_ASM101949v2 12703296 1283032896 PASS PASS PASS PASS 3 0 0 73 58750
SAMN11056481 PRJNA231221 Staphylococcus aureus SRR9641507 WGS 302 1694626190 Illumina HiSeq 4000 PAIRED 2019-07-03T00:00:00Z GCF_006364775.1_ASM636477v1 9965248 1504752448 PASS PASS PASS PASS 0 0 0 24 63397
SAMN03255474 PRJNA231221 Staphylococcus aureus SRR1955856 WGS 202 1677933200 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019485.2_ASM101948v2 16237692 1640006892 PASS PASS PASS PASS 0 0 0 81 63804
SAMN03255460 PRJNA231221 Staphylococcus aureus SRR1955630 WGS 202 1345165268 Illumina HiSeq 2500 PAIRED 2015-05-12T00:00:00Z GCF_001018845.2_ASM101884v2 13116142 1324730342 PASS PASS PASS PASS 0 0 0 43 64240
SAMN03255458 PRJNA231221 Staphylococcus aureus SRR1955625 WGS 202 1594513058 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018835.2_ASM101883v2 15484170 1563901170 PASS PASS PASS PASS 0 0 0 59 67017
SAMN03255448 PRJNA231221 Staphylococcus aureus SRR1955595 WGS 202 1319813056 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019305.2_ASM101930v2 12830706 1295901306 PASS PASS PASS PASS 0 0 0 69 70391
SAMN03255469 PRJNA231221 Staphylococcus aureus SRR1955833 WGS 202 1397612750 Illumina HiSeq 2500 PAIRED 2015-05-12T00:00:00Z GCF_001018975.2_ASM101897v2 13640060 1377646060 PASS PASS PASS PASS 65 0 0 47 78087
SAMN10163180 PRJNA231221 Staphylococcus aureus SRR8178101 WGS 302 3113284780 Illumina HiSeq 4000 PAIRED 2018-11-09T00:00:00Z GCF_003827915.1_ASM382791v1 18049324 2725447924 PASS PASS PASS PASS 0 0 0 51 78707
SAMN03255449 PRJNA231221 Staphylococcus aureus SRR1955597 WGS 202 1642901956 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001018725.2_ASM101872v2 15955132 1611468332 PASS PASS PASS PASS 54 0 2 160 79537
SAMN03255486 PRJNA231221 Staphylococcus aureus SRR1955924 WGS 202 1276265088 Illumina HiSeq 2000 PAIRED 2015-05-12T00:00:00Z GCF_001019575.2_ASM101957v2 12392694 1251662094 PASS PASS PASS PASS 0 0 0 94 80104
SAMN11056375 PRJNA231221 Staphylococcus lugdunensis SRR8984868 WGS 302 3365264822 Illumina HiSeq 4000 PAIRED 2019-04-29T00:00:00Z GCF_008693765.1_ASM869376v1 19580916 2956718316 PASS PASS PASS PASS 0 0 0 30 66329