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  • No due date Last updated 12 months ago

    Next minor release. General code clean up Depreciate homopolymer c…

    Next minor release.

    • General code clean up
    • Depreciate homopolymer collapsed motif search
    • Add fuzzy regex motif option
    • Report metadata with extracted reads in teloclip-extract
    • Log read recovery summary stats per contig
    • Exclude "-F" as per samtools and mosdepth to exclude secondary alignments by default. Or exclude alignments with no sequence.

  • No due date Last updated about 1 year ago

    Major release. Changes entry points. Add sub-command entry points …

    Major release. Changes entry points.

    • Add sub-command entry points for basic teloclip functions [filter, extract, extend]
    • Add new tool extend to automatically extend assembly contigs with overhang sequence.
    • Auto pipeline: map -> filter -> extract-longest -> extend