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"neuron2_slm4_02003.tif", + "neuron2_slm4_02004.tif", + "neuron2_slm4_02005.tif", + "neuron2_slm4_02006.tif", + "neuron2_slm4_02007.tif", + "neuron2_slm4_02008.tif" + ], + "tiff_stem": "neuron2_slm4" + }, + "reward_consumed_during_epoch": null, + "reward_consumed_unit": "microliter", + "trials_total": null, + "trials_finished": null, + "trials_rewarded": null, + "notes": null } - ], - "notes": null - }, - "reward_consumed_total": null, - "reward_consumed_unit": "microliter", - "notes": "test upload" + ], + "mouse_platform_name": "Standard Mouse Tube", + "active_mouse_platform": false, + "reward_delivery": { + "reward_solution": "Water", + "reward_spouts": [ + { + "side": "Center", + "starting_position": { + "device_position_transformations": [ + { + "type": "translation", + "translation": [ + "0.0", + "-6.0", + "0.0" + ] + }, + { + "type": "rotation", + "rotation": [ + "0", + "0", + "0", + "0", + "0", + "0", + "0", + "0", + "0" + ] + } + ], + "device_origin": "tip of the lickspout", + "device_axes": [ + { + "name": "X", + "direction": "lateral motion" + }, + { + "name": "Y", + "direction": "rostro-caudal motion positive is towards mouse, negative is away" + }, + { + "name": "Z", + "direction": "up/down" + } + ], + "notes": null + }, + "variable_position": true + } + ], + "notes": null + }, + "reward_consumed_total": null, + "reward_consumed_unit": "microliter", + "notes": "test upload" } diff --git a/tests/resources/dynamic_routing/mvr_rig.json b/tests/resources/dynamic_routing/mvr_rig.json index 421f7870..93b70b03 100644 --- a/tests/resources/dynamic_routing/mvr_rig.json +++ b/tests/resources/dynamic_routing/mvr_rig.json @@ -1,1267 +1,1267 @@ { - "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py", - "schema_version": "0.3.8", - "rig_id": "327_NP2_240401", - "modification_date": "2024-04-01", - "mouse_platform": { - "device_type": "Disc", - "name": "Mouse Platform", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Radius is the distance from the center of the wheel to the mouse.", - "surface_material": null, - "date_surface_replaced": null, - "radius": "4.69", - "radius_unit": "centimeter", - "output": null, - "encoder": null, - "decoder": null, - "encoder_firmware": null - }, - "stimulus_devices": [ - { - "device_type": "Monitor", - "name": "Stim", - "serial_number": null, - "manufacturer": { - "name": "ASUS", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "00bxkz165" - }, - "model": "PA248", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "refresh_rate": 60, - "width": 1920, - "height": 1200, - "size_unit": "pixel", - "viewing_distance": "15.3", - "viewing_distance_unit": "centimeter", - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.80914", - "-0.58761", - "0", - "-0.12391", - "0.17063", - "0.97751", - "0.08751", - "-0.12079", - "0.02298" - ] - }, - { - "type": "translation", - "translation": [ - "0.08751", - "-0.12079", - "0.02298" - ] - } - ], - "device_origin": "Located at the center of the screen. Right and left conventions are relative to the screen side of the monitor.", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the long edge of the screen. Positive pointing right." - }, - { - "name": "Y", - "direction": "Positive pointing to the top of the screen." - }, - { - "name": "Z", - "direction": "Positive moving away from the screen." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - }, - "contrast": 50, - "brightness": 43 - }, - { - "device_type": "Speaker", - "name": "Speaker", - "serial_number": null, - "manufacturer": { - "name": "ISL Products International", - "abbreviation": "ISL", - "registry": null, - "registry_identifier": null - }, - "model": "SPK-I-81345", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.82783", - "-0.4837", - "-0.28412", - "-0.55894", - "0.75426", - "0.34449", - "0.04767", - "0.44399", - "-0.89476" - ] - }, - { - "type": "translation", - "translation": [ - "-0.00838", - "-0.09787", - "0.18228" - ] - } - ], - "device_origin": "Located on front mounting flange face. Right and left conventions are relative to the front side of the speaker.", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so it will intersect the center of a bolt hole on the mounting flange." - }, - { - "name": "Y", - "direction": "Positive pointing to the top of the speaker." - }, - { - "name": "Z", - "direction": "Positive moving away from the speaker." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z. Speaker to be mounted with the X axis pointing to the right when viewing the speaker along the Z axis" - } - }, - { - "device_type": "Reward delivery", - "stage_type": null, - "reward_spouts": [ - { - "device_type": "Reward spout", - "name": "Reward Spout", - "serial_number": null, - "manufacturer": { - "name": "Hamilton", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "8649-01 Custom", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Spout diameter is for inner diameter. Outer diameter is 1.575mm. ", - "side": "Center", - "spout_diameter": "0.672", - "spout_diameter_unit": "millimeter", - "spout_position": null, - "solenoid_valve": { - "device_type": "Solenoid Valve", - "name": "Solenoid Valve", - "serial_number": null, - "manufacturer": { - "name": "NResearch Inc", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "161K011", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Model number is product number." - }, - "lick_sensor": { - "device_type": "Lick Sensor", - "name": "Lick Sensor", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "lick_sensor_type": "Piezoelectric" - } - ] - } - ], - "cameras": [ - { - "name": "Forward", - "camera_target": "Face forward", - "camera": { - "device_type": "Detector", - "name": "Forward camera", - "serial_number": "50-0536905703", - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": { - "name": "MVR", - "version": "Not detected/provided.", - "url": null, - "parameters": {} - }, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Forward lens", - "serial_number": null, - "manufacturer": { - "name": "Edmund Optics", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "01j1gwp17" - }, - "model": "86604", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "focal_length": "8.5", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Forward filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-715_LP-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Long pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.17365", - "0.98481", - "0", - "0.44709", - "0.07883", - "-0.89101", - "-0.87747", - "-0.15472", - "-0.45399" - ] - }, - { - "type": "translation", - "translation": [ - "0.154", - "0.03078", - "0.06346" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - }, - { - "name": "Side", - "camera_target": "Body", - "camera": { - "device_type": "Detector", - "name": "Side camera", - "serial_number": "50-0536876074", - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": { - "name": "MVR", - "version": "Not detected/provided.", - "url": null, - "parameters": {} - }, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Side lens", - "serial_number": null, - "manufacturer": { - "name": "Navitar", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "focal_length": "6.0", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Side filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-747/33-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Band pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-1", - "0", - "0", - "0", - "0", - "-1", - "0", - "-1", - "0" - ] - }, - { - "type": "translation", - "translation": [ - "-0.03617", - "0.23887", - "-0.02535" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - }, - { - "name": "Eye", - "camera_target": "Eye", - "camera": { - "device_type": "Detector", - "name": "Eye camera", - "serial_number": "50-0536905703", - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": { - "name": "MVR", - "version": "Not detected/provided.", - "url": null, - "parameters": {} - }, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Eye lens", - "serial_number": null, - "manufacturer": { - "name": "Infinity Photo-Optical", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "213073", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Model number is SKU.", - "focal_length": "6.0", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Eye filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-850/10-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Band pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.5", - "-0.86603", - "0", - "-0.366", - "0.21131", - "-0.90631", - "0.78489", - "-0.45315", - "-0.42262" - ] - }, - { - "type": "translation", - "translation": [ - "-0.14259", - "0.06209", - "0.09576" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - } - ], - "enclosure": null, - "ephys_assemblies": [ - { - "name": "Ephys Assembly A", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly A Manipulator", - "serial_number": null, - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeA", - "serial_number": null, - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly B", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly B Manipulator", - "serial_number": null, - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeB", - "serial_number": null, - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly C", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly C Manipulator", - "serial_number": null, - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeC", - "serial_number": null, - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly D", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly D Manipulator", - "serial_number": null, - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeD", - "serial_number": null, - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly E", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly E Manipulator", - "serial_number": null, - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeE", - "serial_number": null, - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly F", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly F Manipulator", - "serial_number": null, - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeF", - "serial_number": null, - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - } - ], - "fiber_assemblies": [], - "stick_microscopes": [], - "laser_assemblies": [], - "patch_cords": [ - { - "device_type": "Patch", - "name": "Patch Cord #1", - "serial_number": null, - "manufacturer": { - "name": "Thorlabs", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "04gsnvb07" - }, - "model": "SM450 Custom Length, FC/PC Ends", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Numerical aperture is approximately between 0.10 and 0.14.", - "core_diameter": "125.0", - "numerical_aperture": "0.1", - "photobleaching_date": null - } - ], - "light_sources": [ - { - "device_type": "Light emitting diode", - "name": "Face forward LED", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "LZ4-40R308-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 740, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Light emitting diode", - "name": "Body LED", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "LZ4-40R308-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 740, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Light emitting diode", - "name": "Eye LED", - "serial_number": null, - "manufacturer": { - "name": "ams OSRAM", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "045d0h266" - }, - "model": "LZ4-40R608-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 850, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Laser", - "name": "Laser #0", - "serial_number": null, - "manufacturer": { - "name": "Vortran", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "Stradus 488-50", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 488, - "wavelength_unit": "nanometer", - "maximum_power": null, - "power_unit": "milliwatt", - "coupling": null, - "coupling_efficiency": null, - "coupling_efficiency_unit": "percent", - "item_number": null - }, - { - "device_type": "Laser", - "name": "Laser #1", - "serial_number": null, - "manufacturer": { - "name": "Vortran", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "Stradus 633-80", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 633, - "wavelength_unit": "nanometer", - "maximum_power": null, - "power_unit": "milliwatt", - "coupling": null, - "coupling_efficiency": null, - "coupling_efficiency_unit": "percent", - "item_number": null - } - ], - "detectors": [ - { - "device_type": "Detector", - "name": "vsync photodiode", - "serial_number": null, - "manufacturer": { - "name": "Thorlabs", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "04gsnvb07" - }, - "model": "PDA25K", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Data interface is unknown.", - "detector_type": "Other", - "data_interface": "Other", - "cooling": "Air", - "computer_name": null, - "max_frame_rate": null, - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": null, - "sensor_width": null, - "sensor_height": null, - "size_unit": "pixel", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - } - ], - "objectives": [], - "filters": [], - "lenses": [], - "digital_micromirror_devices": [], - "polygonal_scanners": [], - "pockels_cells": [], - "additional_devices": [ - { - "device_type": "Detector", - "name": "microphone", - "serial_number": null, - "manufacturer": { - "name": "Dodotronic", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "MOM", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Data interface is unknown." - }, - { - "device_type": "Additional Imaging Device", - "name": "Galvo x", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - { - "device_type": "Additional Imaging Device", - "name": "Galvo y", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - } - ], - "daqs": [ - { - "device_type": "DAQ Device", - "name": "Sync", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6612", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "PCIe", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "Behavior", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6323", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "USB", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "BehaviorSync", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6001", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "PCIe", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "Opto", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-9264", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "Ethernet", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - } - ], - "calibrations": [], - "ccf_coordinate_transform": null, - "origin": "Bregma", - "rig_axes": [ - { - "name": "X", - "direction": "The world horizontal. Lays on the Mouse Sagittal Plane. Positive direction is towards the nose of the mouse. " - }, - { - "name": "Y", - "direction": "Perpendicular to Y. Positive direction is away from the nose of the mouse. " - }, - { - "name": "Z", - "direction": "Positive pointing up." - } - ], - "modalities": [ - { - "name": "Behavior", - "abbreviation": "behavior" - }, - { - "name": "Behavior videos", - "abbreviation": "behavior-videos" - }, - { - "name": "Extracellular electrophysiology", - "abbreviation": "ecephys" - } - ], - "notes": null - } \ No newline at end of file + "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py", + "schema_version": "0.3.8", + "rig_id": "327_NP2_240401", + "modification_date": "2024-04-01", + "mouse_platform": { + "device_type": "Disc", + "name": "Mouse Platform", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Radius is the distance from the center of the wheel to the mouse.", + "surface_material": null, + "date_surface_replaced": null, + "radius": "4.69", + "radius_unit": "centimeter", + "output": null, + "encoder": null, + "decoder": null, + "encoder_firmware": null + }, + "stimulus_devices": [ + { + "device_type": "Monitor", + "name": "Stim", + "serial_number": null, + "manufacturer": { + "name": "ASUS", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "00bxkz165" + }, + "model": "PA248", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "refresh_rate": 60, + "width": 1920, + "height": 1200, + "size_unit": "pixel", + "viewing_distance": "15.3", + "viewing_distance_unit": "centimeter", + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.80914", + "-0.58761", + "0", + "-0.12391", + "0.17063", + "0.97751", + "0.08751", + "-0.12079", + "0.02298" + ] + }, + { + "type": "translation", + "translation": [ + "0.08751", + "-0.12079", + "0.02298" + ] + } + ], + "device_origin": "Located at the center of the screen. Right and left conventions are relative to the screen side of the monitor.", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the long edge of the screen. Positive pointing right." + }, + { + "name": "Y", + "direction": "Positive pointing to the top of the screen." + }, + { + "name": "Z", + "direction": "Positive moving away from the screen." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + }, + "contrast": 50, + "brightness": 43 + }, + { + "device_type": "Speaker", + "name": "Speaker", + "serial_number": null, + "manufacturer": { + "name": "ISL Products International", + "abbreviation": "ISL", + "registry": null, + "registry_identifier": null + }, + "model": "SPK-I-81345", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.82783", + "-0.4837", + "-0.28412", + "-0.55894", + "0.75426", + "0.34449", + "0.04767", + "0.44399", + "-0.89476" + ] + }, + { + "type": "translation", + "translation": [ + "-0.00838", + "-0.09787", + "0.18228" + ] + } + ], + "device_origin": "Located on front mounting flange face. Right and left conventions are relative to the front side of the speaker.", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so it will intersect the center of a bolt hole on the mounting flange." + }, + { + "name": "Y", + "direction": "Positive pointing to the top of the speaker." + }, + { + "name": "Z", + "direction": "Positive moving away from the speaker." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z. Speaker to be mounted with the X axis pointing to the right when viewing the speaker along the Z axis" + } + }, + { + "device_type": "Reward delivery", + "stage_type": null, + "reward_spouts": [ + { + "device_type": "Reward spout", + "name": "Reward Spout", + "serial_number": null, + "manufacturer": { + "name": "Hamilton", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "8649-01 Custom", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Spout diameter is for inner diameter. Outer diameter is 1.575mm. ", + "side": "Center", + "spout_diameter": "0.672", + "spout_diameter_unit": "millimeter", + "spout_position": null, + "solenoid_valve": { + "device_type": "Solenoid Valve", + "name": "Solenoid Valve", + "serial_number": null, + "manufacturer": { + "name": "NResearch Inc", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "161K011", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Model number is product number." + }, + "lick_sensor": { + "device_type": "Lick Sensor", + "name": "Lick Sensor", + "serial_number": null, + "manufacturer": { + "name": "Other", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "lick_sensor_type": "Piezoelectric" + } + ] + } + ], + "cameras": [ + { + "name": "Forward", + "camera_target": "Face forward", + "camera": { + "device_type": "Detector", + "name": "Forward camera", + "serial_number": "50-0536905703", + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": { + "name": "MVR", + "version": "Not detected/provided.", + "url": null, + "parameters": {} + }, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Forward lens", + "serial_number": null, + "manufacturer": { + "name": "Edmund Optics", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "01j1gwp17" + }, + "model": "86604", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "focal_length": "8.5", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Forward filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-715_LP-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Long pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.17365", + "0.98481", + "0", + "0.44709", + "0.07883", + "-0.89101", + "-0.87747", + "-0.15472", + "-0.45399" + ] + }, + { + "type": "translation", + "translation": [ + "0.154", + "0.03078", + "0.06346" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + }, + { + "name": "Side", + "camera_target": "Body", + "camera": { + "device_type": "Detector", + "name": "Side camera", + "serial_number": "50-0536876074", + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": { + "name": "MVR", + "version": "Not detected/provided.", + "url": null, + "parameters": {} + }, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Side lens", + "serial_number": null, + "manufacturer": { + "name": "Navitar", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "focal_length": "6.0", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Side filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-747/33-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Band pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-1", + "0", + "0", + "0", + "0", + "-1", + "0", + "-1", + "0" + ] + }, + { + "type": "translation", + "translation": [ + "-0.03617", + "0.23887", + "-0.02535" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + }, + { + "name": "Eye", + "camera_target": "Eye", + "camera": { + "device_type": "Detector", + "name": "Eye camera", + "serial_number": "50-0536905703", + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": { + "name": "MVR", + "version": "Not detected/provided.", + "url": null, + "parameters": {} + }, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Eye lens", + "serial_number": null, + "manufacturer": { + "name": "Infinity Photo-Optical", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "213073", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Model number is SKU.", + "focal_length": "6.0", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Eye filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-850/10-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Band pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.5", + "-0.86603", + "0", + "-0.366", + "0.21131", + "-0.90631", + "0.78489", + "-0.45315", + "-0.42262" + ] + }, + { + "type": "translation", + "translation": [ + "-0.14259", + "0.06209", + "0.09576" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + } + ], + "enclosure": null, + "ephys_assemblies": [ + { + "name": "Ephys Assembly A", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly A Manipulator", + "serial_number": null, + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeA", + "serial_number": null, + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly B", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly B Manipulator", + "serial_number": null, + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeB", + "serial_number": null, + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly C", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly C Manipulator", + "serial_number": null, + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeC", + "serial_number": null, + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly D", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly D Manipulator", + "serial_number": null, + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeD", + "serial_number": null, + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly E", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly E Manipulator", + "serial_number": null, + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeE", + "serial_number": null, + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly F", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly F Manipulator", + "serial_number": null, + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeF", + "serial_number": null, + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + } + ], + "fiber_assemblies": [], + "stick_microscopes": [], + "laser_assemblies": [], + "patch_cords": [ + { + "device_type": "Patch", + "name": "Patch Cord #1", + "serial_number": null, + "manufacturer": { + "name": "Thorlabs", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "04gsnvb07" + }, + "model": "SM450 Custom Length, FC/PC Ends", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Numerical aperture is approximately between 0.10 and 0.14.", + "core_diameter": "125.0", + "numerical_aperture": "0.1", + "photobleaching_date": null + } + ], + "light_sources": [ + { + "device_type": "Light emitting diode", + "name": "Face forward LED", + "serial_number": null, + "manufacturer": { + "name": "Other", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "LZ4-40R308-0000", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 740, + "wavelength_unit": "nanometer" + }, + { + "device_type": "Light emitting diode", + "name": "Body LED", + "serial_number": null, + "manufacturer": { + "name": "Other", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "LZ4-40R308-0000", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 740, + "wavelength_unit": "nanometer" + }, + { + "device_type": "Light emitting diode", + "name": "Eye LED", + "serial_number": null, + "manufacturer": { + "name": "ams OSRAM", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "045d0h266" + }, + "model": "LZ4-40R608-0000", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 850, + "wavelength_unit": "nanometer" + }, + { + "device_type": "Laser", + "name": "Laser #0", + "serial_number": null, + "manufacturer": { + "name": "Vortran", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "Stradus 488-50", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 488, + "wavelength_unit": "nanometer", + "maximum_power": null, + "power_unit": "milliwatt", + "coupling": null, + "coupling_efficiency": null, + "coupling_efficiency_unit": "percent", + "item_number": null + }, + { + "device_type": "Laser", + "name": "Laser #1", + "serial_number": null, + "manufacturer": { + "name": "Vortran", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "Stradus 633-80", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 633, + "wavelength_unit": "nanometer", + "maximum_power": null, + "power_unit": "milliwatt", + "coupling": null, + "coupling_efficiency": null, + "coupling_efficiency_unit": "percent", + "item_number": null + } + ], + "detectors": [ + { + "device_type": "Detector", + "name": "vsync photodiode", + "serial_number": null, + "manufacturer": { + "name": "Thorlabs", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "04gsnvb07" + }, + "model": "PDA25K", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Data interface is unknown.", + "detector_type": "Other", + "data_interface": "Other", + "cooling": "Air", + "computer_name": null, + "max_frame_rate": null, + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": null, + "sensor_width": null, + "sensor_height": null, + "size_unit": "pixel", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + } + ], + "objectives": [], + "filters": [], + "lenses": [], + "digital_micromirror_devices": [], + "polygonal_scanners": [], + "pockels_cells": [], + "additional_devices": [ + { + "device_type": "Detector", + "name": "microphone", + "serial_number": null, + "manufacturer": { + "name": "Dodotronic", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "MOM", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Data interface is unknown." + }, + { + "device_type": "Additional Imaging Device", + "name": "Galvo x", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + { + "device_type": "Additional Imaging Device", + "name": "Galvo y", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + } + ], + "daqs": [ + { + "device_type": "DAQ Device", + "name": "Sync", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6612", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "PCIe", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "Behavior", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6323", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "USB", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "BehaviorSync", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6001", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "PCIe", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "Opto", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-9264", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "Ethernet", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + } + ], + "calibrations": [], + "ccf_coordinate_transform": null, + "origin": "Bregma", + "rig_axes": [ + { + "name": "X", + "direction": "The world horizontal. Lays on the Mouse Sagittal Plane. Positive direction is towards the nose of the mouse. " + }, + { + "name": "Y", + "direction": "Perpendicular to Y. Positive direction is away from the nose of the mouse. " + }, + { + "name": "Z", + "direction": "Positive pointing up." + } + ], + "modalities": [ + { + "name": "Behavior", + "abbreviation": "behavior" + }, + { + "name": "Behavior videos", + "abbreviation": "behavior-videos" + }, + { + "name": "Extracellular electrophysiology", + "abbreviation": "ecephys" + } + ], + "notes": null +} \ No newline at end of file diff --git a/tests/resources/fip/000000_ophys_session.json b/tests/resources/fip/000000_ophys_session.json index 6f055fa1..944988d9 100644 --- a/tests/resources/fip/000000_ophys_session.json +++ b/tests/resources/fip/000000_ophys_session.json @@ -3,7 +3,7 @@ "schema_version": "0.2.6", "protocol_id": [], "experimenter_full_name": [ - "Don Key" + "Don Key" ], "session_start_time": "1999-10-04T00:00:00Z", "session_end_time": "1999-10-04T00:00:48Z", @@ -17,114 +17,114 @@ "animal_weight_post": null, "weight_unit": "gram", "data_streams": [ - { - "stream_start_time": "1999-10-04T00:00:00Z", - "stream_end_time": "1999-10-04T00:00:48Z", - "daq_names": [], - "camera_names": [], - "light_sources": [ - { - "device_type": "LightEmittingDiode", - "name": "470nm LED", - "excitation_power": "0.02", - "excitation_power_unit": "milliwatt" - }, - { - "device_type": "LightEmittingDiode", - "name": "415nm LED", - "excitation_power": "0.02", - "excitation_power_unit": "milliwatt" - }, - { - "device_type": "LightEmittingDiode", - "name": "565nm LED", - "excitation_power": "0.02", - "excitation_power_unit": "milliwatt" - } - ], - "ephys_modules": [], - "stick_microscopes": [], - "manipulator_modules": [], - "detectors": [ - { - "name": "Hamamatsu Camera", - "exposure_time": "10", - "exposure_time_unit": "millisecond", - "trigger_type": "Internal" - } - ], - "fiber_connections": [ - { - "patch_cord_name": "Patch Cord A", - "patch_cord_output_power": "40", - "output_power_unit": "microwatt", - "fiber_name": "Fiber A" - } - ], - "fiber_modules": [], - "ophys_fovs": [], - "slap_fovs": null, - "stack_parameters": null, - "stream_modalities": [ - { - "name": "Fiber photometry", - "abbreviation": "fib" - } - ], - "notes": null - } + { + "stream_start_time": "1999-10-04T00:00:00Z", + "stream_end_time": "1999-10-04T00:00:48Z", + "daq_names": [], + "camera_names": [], + "light_sources": [ + { + "device_type": "LightEmittingDiode", + "name": "470nm LED", + "excitation_power": "0.02", + "excitation_power_unit": "milliwatt" + }, + { + "device_type": "LightEmittingDiode", + "name": "415nm LED", + "excitation_power": "0.02", + "excitation_power_unit": "milliwatt" + }, + { + "device_type": "LightEmittingDiode", + "name": "565nm LED", + "excitation_power": "0.02", + "excitation_power_unit": "milliwatt" + } + ], + "ephys_modules": [], + "stick_microscopes": [], + "manipulator_modules": [], + "detectors": [ + { + "name": "Hamamatsu Camera", + "exposure_time": "10", + "exposure_time_unit": "millisecond", + "trigger_type": "Internal" + } + ], + "fiber_connections": [ + { + "patch_cord_name": "Patch Cord A", + "patch_cord_output_power": "40", + "output_power_unit": "microwatt", + "fiber_name": "Fiber A" + } + ], + "fiber_modules": [], + "ophys_fovs": [], + "slap_fovs": null, + "stack_parameters": null, + "stream_modalities": [ + { + "name": "Fiber photometry", + "abbreviation": "fib" + } + ], + "notes": null + } ], "stimulus_epochs": [ - { - "stimulus_start_time": "1999-10-04T00:00:00Z", - "stimulus_end_time": "1999-10-04T00:00:48Z", - "stimulus_name": "OptoStim10Hz", - "session_number": null, - "software": [], - "script": null, - "stimulus_modalities": [ - "Optogenetics" - ], - "stimulus_parameters": [ - { - "stimulus_type": "Opto Stimulation", - "stimulus_name": "OptoStim10Hz", - "pulse_shape": "Square", - "pulse_frequency": [ - "10" - ], - "pulse_frequency_unit": "hertz", - "number_pulse_trains": [ - 2 - ], - "pulse_width": [ - 5000 - ], - "pulse_width_unit": "millisecond", - "pulse_train_duration": [ - "2.0" - ], - "pulse_train_duration_unit": "second", - "fixed_pulse_train_interval": true, - "pulse_train_interval": "18.0", - "pulse_train_interval_unit": "second", - "baseline_duration": "10.0", - "baseline_duration_unit": "second", - "other_parameters": {}, - "notes": null - } - ], - "stimulus_device_names": [], - "speaker_config": null, - "light_source_config": null, - "output_parameters": {}, - "reward_consumed_during_epoch": null, - "reward_consumed_unit": "microliter", - "trials_total": null, - "trials_finished": null, - "trials_rewarded": null, - "notes": null - } + { + "stimulus_start_time": "1999-10-04T00:00:00Z", + "stimulus_end_time": "1999-10-04T00:00:48Z", + "stimulus_name": "OptoStim10Hz", + "session_number": null, + "software": [], + "script": null, + "stimulus_modalities": [ + "Optogenetics" + ], + "stimulus_parameters": [ + { + "stimulus_type": "Opto Stimulation", + "stimulus_name": "OptoStim10Hz", + "pulse_shape": "Square", + "pulse_frequency": [ + "10" + ], + "pulse_frequency_unit": "hertz", + "number_pulse_trains": [ + 2 + ], + "pulse_width": [ + 5000 + ], + "pulse_width_unit": "millisecond", + "pulse_train_duration": [ + "2.0" + ], + "pulse_train_duration_unit": "second", + "fixed_pulse_train_interval": true, + "pulse_train_interval": "18.0", + "pulse_train_interval_unit": "second", + "baseline_duration": "10.0", + "baseline_duration_unit": "second", + "other_parameters": {}, + "notes": null + } + ], + "stimulus_device_names": [], + "speaker_config": null, + "light_source_config": null, + "output_parameters": {}, + "reward_consumed_during_epoch": null, + "reward_consumed_unit": "microliter", + "trials_total": null, + "trials_finished": null, + "trials_rewarded": null, + "notes": null + } ], "mouse_platform_name": "Disc", "active_mouse_platform": false, diff --git a/tests/resources/mesoscope/expected_session.json b/tests/resources/mesoscope/expected_session.json index d1a40ce4..f1fb58e9 100644 --- a/tests/resources/mesoscope/expected_session.json +++ b/tests/resources/mesoscope/expected_session.json @@ -370,4 +370,4 @@ "reward_consumed_total": null, "reward_consumed_unit": "microliter", "notes": null -} \ No newline at end of file +} diff --git a/tests/resources/open_ephys/open-ephys-inferred_rig.json b/tests/resources/open_ephys/open-ephys-inferred_rig.json index d5978557..cbfcdd00 100644 --- a/tests/resources/open_ephys/open-ephys-inferred_rig.json +++ b/tests/resources/open_ephys/open-ephys-inferred_rig.json @@ -1,1252 +1,1252 @@ { - "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py", - "schema_version": "0.3.8", - "rig_id": "327_NP2_240401", - "modification_date": "2024-04-01", - "mouse_platform": { - "device_type": "Disc", - "name": "Mouse Platform", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Radius is the distance from the center of the wheel to the mouse.", - "surface_material": null, - "date_surface_replaced": null, - "radius": "4.69", - "radius_unit": "centimeter", - "output": null, - "encoder": null, - "decoder": null, - "encoder_firmware": null - }, - "stimulus_devices": [ - { - "device_type": "Monitor", - "name": "Stim", - "serial_number": null, - "manufacturer": { - "name": "ASUS", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "00bxkz165" - }, - "model": "PA248", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "refresh_rate": 60, - "width": 1920, - "height": 1200, - "size_unit": "pixel", - "viewing_distance": "15.3", - "viewing_distance_unit": "centimeter", - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.80914", - "-0.58761", - "0", - "-0.12391", - "0.17063", - "0.97751", - "0.08751", - "-0.12079", - "0.02298" - ] - }, - { - "type": "translation", - "translation": [ - "0.08751", - "-0.12079", - "0.02298" - ] - } - ], - "device_origin": "Located at the center of the screen. Right and left conventions are relative to the screen side of the monitor.", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the long edge of the screen. Positive pointing right." - }, - { - "name": "Y", - "direction": "Positive pointing to the top of the screen." - }, - { - "name": "Z", - "direction": "Positive moving away from the screen." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - }, - "contrast": 50, - "brightness": 43 - }, - { - "device_type": "Speaker", - "name": "Speaker", - "serial_number": null, - "manufacturer": { - "name": "ISL Products International", - "abbreviation": "ISL", - "registry": null, - "registry_identifier": null - }, - "model": "SPK-I-81345", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.82783", - "-0.4837", - "-0.28412", - "-0.55894", - "0.75426", - "0.34449", - "0.04767", - "0.44399", - "-0.89476" - ] - }, - { - "type": "translation", - "translation": [ - "-0.00838", - "-0.09787", - "0.18228" - ] - } - ], - "device_origin": "Located on front mounting flange face. Right and left conventions are relative to the front side of the speaker.", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so it will intersect the center of a bolt hole on the mounting flange." - }, - { - "name": "Y", - "direction": "Positive pointing to the top of the speaker." - }, - { - "name": "Z", - "direction": "Positive moving away from the speaker." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z. Speaker to be mounted with the X axis pointing to the right when viewing the speaker along the Z axis" - } - }, - { - "device_type": "Reward delivery", - "stage_type": null, - "reward_spouts": [ - { - "device_type": "Reward spout", - "name": "Reward Spout", - "serial_number": null, - "manufacturer": { - "name": "Hamilton", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "8649-01 Custom", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Spout diameter is for inner diameter. Outer diameter is 1.575mm. ", - "side": "Center", - "spout_diameter": "0.672", - "spout_diameter_unit": "millimeter", - "spout_position": null, - "solenoid_valve": { - "device_type": "Solenoid Valve", - "name": "Solenoid Valve", - "serial_number": null, - "manufacturer": { - "name": "NResearch Inc", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "161K011", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Model number is product number." - }, - "lick_sensor": { - "device_type": "Lick Sensor", - "name": "Lick Sensor", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "lick_sensor_type": "Piezoelectric" - } - ] - } - ], - "cameras": [ - { - "name": "Forward", - "camera_target": "Face forward", - "camera": { - "device_type": "Detector", - "name": "Forward camera", - "serial_number": null, - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Forward lens", - "serial_number": null, - "manufacturer": { - "name": "Edmund Optics", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "01j1gwp17" - }, - "model": "86604", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "focal_length": "8.5", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Forward filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-715_LP-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Long pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.17365", - "0.98481", - "0", - "0.44709", - "0.07883", - "-0.89101", - "-0.87747", - "-0.15472", - "-0.45399" - ] - }, - { - "type": "translation", - "translation": [ - "0.154", - "0.03078", - "0.06346" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - }, - { - "name": "Side", - "camera_target": "Body", - "camera": { - "device_type": "Detector", - "name": "Side camera", - "serial_number": null, - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Side lens", - "serial_number": null, - "manufacturer": { - "name": "Navitar", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "focal_length": "6.0", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Side filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-747/33-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Band pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-1", - "0", - "0", - "0", - "0", - "-1", - "0", - "-1", - "0" - ] - }, - { - "type": "translation", - "translation": [ - "-0.03617", - "0.23887", - "-0.02535" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - }, - { - "name": "Eye", - "camera_target": "Eye", - "camera": { - "device_type": "Detector", - "name": "Eye camera", - "serial_number": null, - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Eye lens", - "serial_number": null, - "manufacturer": { - "name": "Infinity Photo-Optical", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "213073", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Model number is SKU.", - "focal_length": "6.0", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Eye filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-850/10-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Band pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.5", - "-0.86603", - "0", - "-0.366", - "0.21131", - "-0.90631", - "0.78489", - "-0.45315", - "-0.42262" - ] - }, - { - "type": "translation", - "translation": [ - "-0.14259", - "0.06209", - "0.09576" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - } - ], - "enclosure": null, - "ephys_assemblies": [ - { - "name": "Ephys Assembly A", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly A Manipulator", - "serial_number": "SN45356", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeA", - "serial_number": "18005114152", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - 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"serial_number": "SN45482", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeE", - "serial_number": "18005114452", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly F", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly F Manipulator", - "serial_number": "SN45361", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeF", - "serial_number": "19192719061", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - } - ], - "fiber_assemblies": [], - "stick_microscopes": [], - "laser_assemblies": [], - "patch_cords": [ - { - "device_type": "Patch", - "name": "Patch Cord #1", - "serial_number": null, - "manufacturer": { - "name": "Thorlabs", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "04gsnvb07" - }, - "model": "SM450 Custom Length, FC/PC Ends", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Numerical aperture is approximately between 0.10 and 0.14.", - "core_diameter": "125.0", - "numerical_aperture": "0.1", - "photobleaching_date": null - } - ], - "light_sources": [ - { - "device_type": "Light emitting diode", - "name": "Face forward LED", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "LZ4-40R308-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 740, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Light emitting diode", - "name": "Body LED", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "LZ4-40R308-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 740, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Light emitting diode", - "name": "Eye LED", - "serial_number": null, - "manufacturer": { - "name": "ams OSRAM", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "045d0h266" - }, - "model": "LZ4-40R608-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 850, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Laser", - "name": "Laser #0", - "serial_number": null, - "manufacturer": { - "name": "Vortran", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "Stradus 488-50", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 488, - "wavelength_unit": "nanometer", - "maximum_power": null, - "power_unit": "milliwatt", - "coupling": null, - "coupling_efficiency": null, - "coupling_efficiency_unit": "percent", - "item_number": null - }, - { - "device_type": "Laser", - "name": "Laser #1", - "serial_number": null, - "manufacturer": { - "name": "Vortran", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "Stradus 633-80", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 633, - "wavelength_unit": "nanometer", - "maximum_power": null, - "power_unit": "milliwatt", - "coupling": null, - "coupling_efficiency": null, - "coupling_efficiency_unit": "percent", - "item_number": null - } - ], - "detectors": [ - { - "device_type": "Detector", - "name": "vsync photodiode", - "serial_number": null, - "manufacturer": { - "name": "Thorlabs", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "04gsnvb07" - }, - "model": "PDA25K", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Data interface is unknown.", - "detector_type": "Other", - "data_interface": "Other", - "cooling": "Air", - "computer_name": null, - "max_frame_rate": null, - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": null, - "sensor_width": null, - "sensor_height": null, - "size_unit": "pixel", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - } - ], - "objectives": [], - "filters": [], - "lenses": [], - "digital_micromirror_devices": [], - "polygonal_scanners": [], - "pockels_cells": [], - "additional_devices": [ - { - "device_type": "Detector", - "name": "microphone", - "serial_number": null, - "manufacturer": { - "name": "Dodotronic", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "MOM", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Data interface is unknown." - }, - { - "device_type": "Additional Imaging Device", - "name": "Galvo x", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - { - "device_type": "Additional Imaging Device", - "name": "Galvo y", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - } - ], - "daqs": [ - { - "device_type": "DAQ Device", - "name": "Sync", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6612", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "PCIe", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "Behavior", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6323", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "USB", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "BehaviorSync", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6001", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "PCIe", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "Opto", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-9264", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "Ethernet", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - } - ], - "calibrations": [], - "ccf_coordinate_transform": null, - "origin": "Bregma", - "rig_axes": [ - { - "name": "X", - "direction": "The world horizontal. Lays on the Mouse Sagittal Plane. Positive direction is towards the nose of the mouse. " - }, - { - "name": "Y", - "direction": "Perpendicular to Y. Positive direction is away from the nose of the mouse. " - }, - { - "name": "Z", - "direction": "Positive pointing up." - } - ], - "modalities": [ - { - "name": "Behavior", - "abbreviation": "behavior" - }, - { - "name": "Behavior videos", - "abbreviation": "behavior-videos" - }, - { - "name": "Extracellular electrophysiology", - "abbreviation": "ecephys" - } - ], - "notes": null + "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py", + "schema_version": "0.3.8", + "rig_id": "327_NP2_240401", + "modification_date": "2024-04-01", + "mouse_platform": { + "device_type": "Disc", + "name": "Mouse Platform", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Radius is the distance from the center of the wheel to the mouse.", + "surface_material": null, + "date_surface_replaced": null, + "radius": "4.69", + "radius_unit": "centimeter", + "output": null, + "encoder": null, + "decoder": null, + "encoder_firmware": null + }, + "stimulus_devices": [ + { + "device_type": "Monitor", + "name": "Stim", + "serial_number": null, + "manufacturer": { + "name": "ASUS", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "00bxkz165" + }, + "model": "PA248", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "refresh_rate": 60, + "width": 1920, + "height": 1200, + "size_unit": "pixel", + "viewing_distance": "15.3", + "viewing_distance_unit": "centimeter", + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.80914", + "-0.58761", + "0", + "-0.12391", + "0.17063", + "0.97751", + "0.08751", + "-0.12079", + "0.02298" + ] + }, + { + "type": "translation", + "translation": [ + "0.08751", + "-0.12079", + "0.02298" + ] + } + ], + "device_origin": "Located at the center of the screen. Right and left conventions are relative to the screen side of the monitor.", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the long edge of the screen. Positive pointing right." + }, + { + "name": "Y", + "direction": "Positive pointing to the top of the screen." + }, + { + "name": "Z", + "direction": "Positive moving away from the screen." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + }, + "contrast": 50, + "brightness": 43 + }, + { + "device_type": "Speaker", + "name": "Speaker", + "serial_number": null, + "manufacturer": { + "name": "ISL Products International", + "abbreviation": "ISL", + "registry": null, + "registry_identifier": null + }, + "model": "SPK-I-81345", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.82783", + "-0.4837", + "-0.28412", + "-0.55894", + "0.75426", + "0.34449", + "0.04767", + "0.44399", + "-0.89476" + ] + }, + { + "type": "translation", + "translation": [ + "-0.00838", + "-0.09787", + "0.18228" + ] + } + ], + "device_origin": "Located on front mounting flange face. Right and left conventions are relative to the front side of the speaker.", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so it will intersect the center of a bolt hole on the mounting flange." + }, + { + "name": "Y", + "direction": "Positive pointing to the top of the speaker." + }, + { + "name": "Z", + "direction": "Positive moving away from the speaker." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z. Speaker to be mounted with the X axis pointing to the right when viewing the speaker along the Z axis" + } + }, + { + "device_type": "Reward delivery", + "stage_type": null, + "reward_spouts": [ + { + "device_type": "Reward spout", + "name": "Reward Spout", + "serial_number": null, + "manufacturer": { + "name": "Hamilton", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "8649-01 Custom", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Spout diameter is for inner diameter. Outer diameter is 1.575mm. ", + "side": "Center", + "spout_diameter": "0.672", + "spout_diameter_unit": "millimeter", + "spout_position": null, + "solenoid_valve": { + "device_type": "Solenoid Valve", + "name": "Solenoid Valve", + "serial_number": null, + "manufacturer": { + "name": "NResearch Inc", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "161K011", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Model number is product number." + }, + "lick_sensor": { + "device_type": "Lick Sensor", + "name": "Lick Sensor", + "serial_number": null, + "manufacturer": { + "name": "Other", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "lick_sensor_type": "Piezoelectric" + } + ] + } + ], + "cameras": [ + { + "name": "Forward", + "camera_target": "Face forward", + "camera": { + "device_type": "Detector", + "name": "Forward camera", + "serial_number": null, + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Forward lens", + "serial_number": null, + "manufacturer": { + "name": "Edmund Optics", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "01j1gwp17" + }, + "model": "86604", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "focal_length": "8.5", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Forward filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-715_LP-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Long pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.17365", + "0.98481", + "0", + "0.44709", + "0.07883", + "-0.89101", + "-0.87747", + "-0.15472", + "-0.45399" + ] + }, + { + "type": "translation", + "translation": [ + "0.154", + "0.03078", + "0.06346" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + }, + { + "name": "Side", + "camera_target": "Body", + "camera": { + "device_type": "Detector", + "name": "Side camera", + "serial_number": null, + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Side lens", + "serial_number": null, + "manufacturer": { + "name": "Navitar", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "focal_length": "6.0", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Side filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-747/33-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Band pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-1", + "0", + "0", + "0", + "0", + "-1", + "0", + "-1", + "0" + ] + }, + { + "type": "translation", + "translation": [ + "-0.03617", + "0.23887", + "-0.02535" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + }, + { + "name": "Eye", + "camera_target": "Eye", + "camera": { + "device_type": "Detector", + "name": "Eye camera", + "serial_number": null, + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Eye lens", + "serial_number": null, + "manufacturer": { + "name": "Infinity Photo-Optical", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "213073", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Model number is SKU.", + "focal_length": "6.0", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Eye filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-850/10-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Band pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.5", + "-0.86603", + "0", + "-0.366", + "0.21131", + "-0.90631", + "0.78489", + "-0.45315", + "-0.42262" + ] + }, + { + "type": "translation", + "translation": [ + "-0.14259", + "0.06209", + "0.09576" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + } + ], + "enclosure": null, + "ephys_assemblies": [ + { + "name": "Ephys Assembly A", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly A Manipulator", + "serial_number": "SN45356", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeA", + "serial_number": "18005114152", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly B", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly B Manipulator", + "serial_number": "SN45484", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeB", + "serial_number": "18005114151", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly C", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly C Manipulator", + "serial_number": "SN45485", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeC", + "serial_number": "18005102491", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly D", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly D Manipulator", + "serial_number": "SN45359", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeD", + "serial_number": "19192719021", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly E", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly E Manipulator", + "serial_number": "SN45482", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeE", + "serial_number": "18005114452", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly F", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly F Manipulator", + "serial_number": "SN45361", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeF", + "serial_number": "19192719061", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + } + ], + "fiber_assemblies": [], + "stick_microscopes": [], + "laser_assemblies": [], + "patch_cords": [ + { + "device_type": "Patch", + "name": "Patch Cord #1", + "serial_number": null, + "manufacturer": { + "name": "Thorlabs", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "04gsnvb07" + }, + "model": "SM450 Custom Length, FC/PC Ends", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Numerical aperture is approximately between 0.10 and 0.14.", + "core_diameter": "125.0", + "numerical_aperture": "0.1", + "photobleaching_date": null + } + ], + "light_sources": [ + { + "device_type": "Light emitting diode", + "name": "Face forward LED", + "serial_number": null, + "manufacturer": { + "name": "Other", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "LZ4-40R308-0000", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 740, + "wavelength_unit": "nanometer" + }, + { + "device_type": "Light emitting diode", + "name": "Body LED", + "serial_number": null, + "manufacturer": { + "name": "Other", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "LZ4-40R308-0000", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 740, + "wavelength_unit": "nanometer" + }, + { + "device_type": "Light emitting diode", + "name": "Eye LED", + "serial_number": null, + "manufacturer": { + "name": "ams OSRAM", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "045d0h266" + }, + "model": "LZ4-40R608-0000", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 850, + "wavelength_unit": "nanometer" + }, + { + "device_type": "Laser", + "name": "Laser #0", + "serial_number": null, + "manufacturer": { + "name": "Vortran", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "Stradus 488-50", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 488, + "wavelength_unit": "nanometer", + "maximum_power": null, + "power_unit": "milliwatt", + "coupling": null, + "coupling_efficiency": null, + "coupling_efficiency_unit": "percent", + "item_number": null + }, + { + "device_type": "Laser", + "name": "Laser #1", + "serial_number": null, + "manufacturer": { + "name": "Vortran", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "Stradus 633-80", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 633, + "wavelength_unit": "nanometer", + "maximum_power": null, + "power_unit": "milliwatt", + "coupling": null, + "coupling_efficiency": null, + "coupling_efficiency_unit": "percent", + "item_number": null + } + ], + "detectors": [ + { + "device_type": "Detector", + "name": "vsync photodiode", + "serial_number": null, + "manufacturer": { + "name": "Thorlabs", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "04gsnvb07" + }, + "model": "PDA25K", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Data interface is unknown.", + "detector_type": "Other", + "data_interface": "Other", + "cooling": "Air", + "computer_name": null, + "max_frame_rate": null, + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": null, + "sensor_width": null, + "sensor_height": null, + "size_unit": "pixel", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + } + ], + "objectives": [], + "filters": [], + "lenses": [], + "digital_micromirror_devices": [], + "polygonal_scanners": [], + "pockels_cells": [], + "additional_devices": [ + { + "device_type": "Detector", + "name": "microphone", + "serial_number": null, + "manufacturer": { + "name": "Dodotronic", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "MOM", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Data interface is unknown." + }, + { + "device_type": "Additional Imaging Device", + "name": "Galvo x", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + { + "device_type": "Additional Imaging Device", + "name": "Galvo y", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + } + ], + "daqs": [ + { + "device_type": "DAQ Device", + "name": "Sync", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6612", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "PCIe", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "Behavior", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6323", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "USB", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "BehaviorSync", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6001", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "PCIe", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "Opto", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-9264", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "Ethernet", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + } + ], + "calibrations": [], + "ccf_coordinate_transform": null, + "origin": "Bregma", + "rig_axes": [ + { + "name": "X", + "direction": "The world horizontal. Lays on the Mouse Sagittal Plane. Positive direction is towards the nose of the mouse. " + }, + { + "name": "Y", + "direction": "Perpendicular to Y. Positive direction is away from the nose of the mouse. " + }, + { + "name": "Z", + "direction": "Positive pointing up." + } + ], + "modalities": [ + { + "name": "Behavior", + "abbreviation": "behavior" + }, + { + "name": "Behavior videos", + "abbreviation": "behavior-videos" + }, + { + "name": "Extracellular electrophysiology", + "abbreviation": "ecephys" + } + ], + "notes": null } \ No newline at end of file diff --git a/tests/resources/open_ephys/open-ephys_rig.json b/tests/resources/open_ephys/open-ephys_rig.json index 069503d8..cebe59b4 100644 --- a/tests/resources/open_ephys/open-ephys_rig.json +++ b/tests/resources/open_ephys/open-ephys_rig.json @@ -1,1252 +1,1252 @@ { - "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py", - "schema_version": "0.3.8", - "rig_id": "327_NP2_240401", - "modification_date": "2024-04-01", - "mouse_platform": { - "device_type": "Disc", - "name": "Mouse Platform", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Radius is the distance from the center of the wheel to the mouse.", - "surface_material": null, - "date_surface_replaced": null, - "radius": "4.69", - "radius_unit": "centimeter", - "output": null, - "encoder": null, - "decoder": null, - "encoder_firmware": null - }, - "stimulus_devices": [ - { - "device_type": "Monitor", - "name": "Stim", - "serial_number": null, - "manufacturer": { - "name": "ASUS", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "00bxkz165" - }, - "model": "PA248", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "refresh_rate": 60, - "width": 1920, - "height": 1200, - "size_unit": "pixel", - "viewing_distance": "15.3", - "viewing_distance_unit": "centimeter", - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.80914", - "-0.58761", - "0", - "-0.12391", - "0.17063", - "0.97751", - "0.08751", - "-0.12079", - "0.02298" - ] - }, - { - "type": "translation", - "translation": [ - "0.08751", - "-0.12079", - "0.02298" - ] - } - ], - "device_origin": "Located at the center of the screen. Right and left conventions are relative to the screen side of the monitor.", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the long edge of the screen. Positive pointing right." - }, - { - "name": "Y", - "direction": "Positive pointing to the top of the screen." - }, - { - "name": "Z", - "direction": "Positive moving away from the screen." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - }, - "contrast": 50, - "brightness": 43 - }, - { - "device_type": "Speaker", - "name": "Speaker", - "serial_number": null, - "manufacturer": { - "name": "ISL Products International", - "abbreviation": "ISL", - "registry": null, - "registry_identifier": null - }, - "model": "SPK-I-81345", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.82783", - "-0.4837", - "-0.28412", - "-0.55894", - "0.75426", - "0.34449", - "0.04767", - "0.44399", - "-0.89476" - ] - }, - { - "type": "translation", - "translation": [ - "-0.00838", - "-0.09787", - "0.18228" - ] - } - ], - "device_origin": "Located on front mounting flange face. Right and left conventions are relative to the front side of the speaker.", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so it will intersect the center of a bolt hole on the mounting flange." - }, - { - "name": "Y", - "direction": "Positive pointing to the top of the speaker." - }, - { - "name": "Z", - "direction": "Positive moving away from the speaker." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z. Speaker to be mounted with the X axis pointing to the right when viewing the speaker along the Z axis" - } - }, - { - "device_type": "Reward delivery", - "stage_type": null, - "reward_spouts": [ - { - "device_type": "Reward spout", - "name": "Reward Spout", - "serial_number": null, - "manufacturer": { - "name": "Hamilton", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "8649-01 Custom", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Spout diameter is for inner diameter. Outer diameter is 1.575mm. ", - "side": "Center", - "spout_diameter": "0.672", - "spout_diameter_unit": "millimeter", - "spout_position": null, - "solenoid_valve": { - "device_type": "Solenoid Valve", - "name": "Solenoid Valve", - "serial_number": null, - "manufacturer": { - "name": "NResearch Inc", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "161K011", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Model number is product number." - }, - "lick_sensor": { - "device_type": "Lick Sensor", - "name": "Lick Sensor", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "lick_sensor_type": "Piezoelectric" - } - ] - } - ], - "cameras": [ - { - "name": "Forward", - "camera_target": "Face forward", - "camera": { - "device_type": "Detector", - "name": "Forward camera", - "serial_number": null, - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Forward lens", - "serial_number": null, - "manufacturer": { - "name": "Edmund Optics", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "01j1gwp17" - }, - "model": "86604", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "focal_length": "8.5", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Forward filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-715_LP-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Long pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.17365", - "0.98481", - "0", - "0.44709", - "0.07883", - "-0.89101", - "-0.87747", - "-0.15472", - "-0.45399" - ] - }, - { - "type": "translation", - "translation": [ - "0.154", - "0.03078", - "0.06346" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - }, - { - "name": "Side", - "camera_target": "Body", - "camera": { - "device_type": "Detector", - "name": "Side camera", - "serial_number": null, - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Side lens", - "serial_number": null, - "manufacturer": { - "name": "Navitar", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "focal_length": "6.0", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Side filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-747/33-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Band pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-1", - "0", - "0", - "0", - "0", - "-1", - "0", - "-1", - "0" - ] - }, - { - "type": "translation", - "translation": [ - "-0.03617", - "0.23887", - "-0.02535" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - }, - { - "name": "Eye", - "camera_target": "Eye", - "camera": { - "device_type": "Detector", - "name": "Eye camera", - "serial_number": null, - "manufacturer": { - "name": "Allied", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "G-032", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Max frame rate is at maximum resolution.", - "detector_type": "Camera", - "data_interface": "Ethernet", - "cooling": "None", - "computer_name": "127.0.0.1", - "max_frame_rate": "102", - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": "Monochrome", - "sensor_width": 7400, - "sensor_height": 7400, - "size_unit": "nanometer", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - }, - "lens": { - "device_type": "Lens", - "name": "Eye lens", - "serial_number": null, - "manufacturer": { - "name": "Infinity Photo-Optical", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "213073", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Model number is SKU.", - "focal_length": "6.0", - "focal_length_unit": "millimeter", - "size": null, - "lens_size_unit": "inch", - "optimized_wavelength_range": null, - "wavelength_unit": "nanometer", - "max_aperture": null - }, - "filter": { - "device_type": "Filter", - "name": "Eye filter", - "serial_number": null, - "manufacturer": { - "name": "Semrock", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "FF01-850/10-25", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "filter_type": "Band pass", - "diameter": null, - "width": null, - "height": null, - "size_unit": "millimeter", - "thickness": null, - "thickness_unit": "millimeter", - "filter_wheel_index": null, - "cut_off_wavelength": null, - "cut_on_wavelength": null, - "center_wavelength": null, - "wavelength_unit": "nanometer", - "description": null - }, - "position": { - "device_position_transformations": [ - { - "type": "rotation", - "rotation": [ - "-0.5", - "-0.86603", - "0", - "-0.366", - "0.21131", - "-0.90631", - "0.78489", - "-0.45315", - "-0.42262" - ] - }, - { - "type": "translation", - "translation": [ - "-0.14259", - "0.06209", - "0.09576" - ] - } - ], - "device_origin": "Located on face of the lens mounting surface in its center", - "device_axes": [ - { - "name": "X", - "direction": "Oriented so that it is parallel to the bottom edge of the sensor." - }, - { - "name": "Y", - "direction": "Pointing to the bottom edge of the sensor." - }, - { - "name": "Z", - "direction": "Positive moving away from the sensor towards the object." - } - ], - "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." - } - } - ], - "enclosure": null, - "ephys_assemblies": [ - { - "name": "Ephys Assembly A", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly A Manipulator", - "serial_number": "SN45356", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeA", - "serial_number": "19192719051", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly B", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly B Manipulator", - "serial_number": "SN45484", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeB", - "serial_number": "19192719091", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly C", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly C Manipulator", - "serial_number": "SN45485", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeC", - "serial_number": "19192719721", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly D", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly D Manipulator", - "serial_number": "SN45359", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeD", - "serial_number": "18005117641", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly E", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly E Manipulator", - "serial_number": "SN45482", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeE", - "serial_number": "18005107542", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - }, - { - "name": "Ephys Assembly F", - "manipulator": { - "device_type": "Manipulator", - "name": "Ephys Assembly F Manipulator", - "serial_number": "SN45361", - "manufacturer": { - "name": "New Scale Technologies", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "06591-M-0004", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - "probes": [ - { - "device_type": "Ephys probe", - "name": "ProbeF", - "serial_number": "19192719101", - "manufacturer": { - "name": "Interuniversity Microelectronics Center", - "abbreviation": "IMEC", - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "02kcbn207" - }, - "model": "Neuropixels 1.0", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "probe_model": "Neuropixels 1.0", - "lasers": [], - "headstage": null - } - ] - } - ], - "fiber_assemblies": [], - "stick_microscopes": [], - "laser_assemblies": [], - "patch_cords": [ - { - "device_type": "Patch", - "name": "Patch Cord #1", - "serial_number": null, - "manufacturer": { - "name": "Thorlabs", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "04gsnvb07" - }, - "model": "SM450 Custom Length, FC/PC Ends", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Numerical aperture is approximately between 0.10 and 0.14.", - "core_diameter": "125.0", - "numerical_aperture": "0.1", - "photobleaching_date": null - } - ], - "light_sources": [ - { - "device_type": "Light emitting diode", - "name": "Face forward LED", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "LZ4-40R308-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 740, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Light emitting diode", - "name": "Body LED", - "serial_number": null, - "manufacturer": { - "name": "Other", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "LZ4-40R308-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 740, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Light emitting diode", - "name": "Eye LED", - "serial_number": null, - "manufacturer": { - "name": "ams OSRAM", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "045d0h266" - }, - "model": "LZ4-40R608-0000", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 850, - "wavelength_unit": "nanometer" - }, - { - "device_type": "Laser", - "name": "Laser #0", - "serial_number": null, - "manufacturer": { - "name": "Vortran", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "Stradus 488-50", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 488, - "wavelength_unit": "nanometer", - "maximum_power": null, - "power_unit": "milliwatt", - "coupling": null, - "coupling_efficiency": null, - "coupling_efficiency_unit": "percent", - "item_number": null - }, - { - "device_type": "Laser", - "name": "Laser #1", - "serial_number": null, - "manufacturer": { - "name": "Vortran", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "Stradus 633-80", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "wavelength": 633, - "wavelength_unit": "nanometer", - "maximum_power": null, - "power_unit": "milliwatt", - "coupling": null, - "coupling_efficiency": null, - "coupling_efficiency_unit": "percent", - "item_number": null - } - ], - "detectors": [ - { - "device_type": "Detector", - "name": "vsync photodiode", - "serial_number": null, - "manufacturer": { - "name": "Thorlabs", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "04gsnvb07" - }, - "model": "PDA25K", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Data interface is unknown.", - "detector_type": "Other", - "data_interface": "Other", - "cooling": "Air", - "computer_name": null, - "max_frame_rate": null, - "frame_rate_unit": "hertz", - "immersion": null, - "chroma": null, - "sensor_width": null, - "sensor_height": null, - "size_unit": "pixel", - "sensor_format": null, - "sensor_format_unit": null, - "bit_depth": null, - "bin_mode": "None", - "bin_width": null, - "bin_height": null, - "bin_unit": "pixel", - "gain": null, - "crop_width": null, - "crop_height": null, - "crop_unit": "pixel", - "recording_software": null, - "driver": null, - "driver_version": null - } - ], - "objectives": [], - "filters": [], - "lenses": [], - "digital_micromirror_devices": [], - "polygonal_scanners": [], - "pockels_cells": [], - "additional_devices": [ - { - "device_type": "Detector", - "name": "microphone", - "serial_number": null, - "manufacturer": { - "name": "Dodotronic", - "abbreviation": null, - "registry": null, - "registry_identifier": null - }, - "model": "MOM", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": "Data interface is unknown." - }, - { - "device_type": "Additional Imaging Device", - "name": "Galvo x", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - }, - { - "device_type": "Additional Imaging Device", - "name": "Galvo y", - "serial_number": null, - "manufacturer": null, - "model": null, - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null - } - ], - "daqs": [ - { - "device_type": "DAQ Device", - "name": "Sync", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6612", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "PCIe", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "Behavior", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6323", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "USB", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "BehaviorSync", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-6001", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "PCIe", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - }, - { - "device_type": "DAQ Device", - "name": "Opto", - "serial_number": null, - "manufacturer": { - "name": "National Instruments", - "abbreviation": null, - "registry": { - "name": "Research Organization Registry", - "abbreviation": "ROR" - }, - "registry_identifier": "026exqw73" - }, - "model": "NI-9264", - "path_to_cad": null, - "port_index": null, - "additional_settings": {}, - "notes": null, - "data_interface": "Ethernet", - "computer_name": "127.0.0.1", - "channels": [], - "firmware_version": null, - "hardware_version": null - } - ], - "calibrations": [], - "ccf_coordinate_transform": null, - "origin": "Bregma", - "rig_axes": [ - { - "name": "X", - "direction": "The world horizontal. Lays on the Mouse Sagittal Plane. Positive direction is towards the nose of the mouse. " - }, - { - "name": "Y", - "direction": "Perpendicular to Y. Positive direction is away from the nose of the mouse. " - }, - { - "name": "Z", - "direction": "Positive pointing up." - } - ], - "modalities": [ - { - "name": "Behavior", - "abbreviation": "behavior" - }, - { - "name": "Behavior videos", - "abbreviation": "behavior-videos" - }, - { - "name": "Extracellular electrophysiology", - "abbreviation": "ecephys" - } - ], - "notes": null - } \ No newline at end of file + "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py", + "schema_version": "0.3.8", + "rig_id": "327_NP2_240401", + "modification_date": "2024-04-01", + "mouse_platform": { + "device_type": "Disc", + "name": "Mouse Platform", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Radius is the distance from the center of the wheel to the mouse.", + "surface_material": null, + "date_surface_replaced": null, + "radius": "4.69", + "radius_unit": "centimeter", + "output": null, + "encoder": null, + "decoder": null, + "encoder_firmware": null + }, + "stimulus_devices": [ + { + "device_type": "Monitor", + "name": "Stim", + "serial_number": null, + "manufacturer": { + "name": "ASUS", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "00bxkz165" + }, + "model": "PA248", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "refresh_rate": 60, + "width": 1920, + "height": 1200, + "size_unit": "pixel", + "viewing_distance": "15.3", + "viewing_distance_unit": "centimeter", + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.80914", + "-0.58761", + "0", + "-0.12391", + "0.17063", + "0.97751", + "0.08751", + "-0.12079", + "0.02298" + ] + }, + { + "type": "translation", + "translation": [ + "0.08751", + "-0.12079", + "0.02298" + ] + } + ], + "device_origin": "Located at the center of the screen. Right and left conventions are relative to the screen side of the monitor.", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the long edge of the screen. Positive pointing right." + }, + { + "name": "Y", + "direction": "Positive pointing to the top of the screen." + }, + { + "name": "Z", + "direction": "Positive moving away from the screen." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + }, + "contrast": 50, + "brightness": 43 + }, + { + "device_type": "Speaker", + "name": "Speaker", + "serial_number": null, + "manufacturer": { + "name": "ISL Products International", + "abbreviation": "ISL", + "registry": null, + "registry_identifier": null + }, + "model": "SPK-I-81345", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.82783", + "-0.4837", + "-0.28412", + "-0.55894", + "0.75426", + "0.34449", + "0.04767", + "0.44399", + "-0.89476" + ] + }, + { + "type": "translation", + "translation": [ + "-0.00838", + "-0.09787", + "0.18228" + ] + } + ], + "device_origin": "Located on front mounting flange face. Right and left conventions are relative to the front side of the speaker.", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so it will intersect the center of a bolt hole on the mounting flange." + }, + { + "name": "Y", + "direction": "Positive pointing to the top of the speaker." + }, + { + "name": "Z", + "direction": "Positive moving away from the speaker." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z. Speaker to be mounted with the X axis pointing to the right when viewing the speaker along the Z axis" + } + }, + { + "device_type": "Reward delivery", + "stage_type": null, + "reward_spouts": [ + { + "device_type": "Reward spout", + "name": "Reward Spout", + "serial_number": null, + "manufacturer": { + "name": "Hamilton", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "8649-01 Custom", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Spout diameter is for inner diameter. Outer diameter is 1.575mm. ", + "side": "Center", + "spout_diameter": "0.672", + "spout_diameter_unit": "millimeter", + "spout_position": null, + "solenoid_valve": { + "device_type": "Solenoid Valve", + "name": "Solenoid Valve", + "serial_number": null, + "manufacturer": { + "name": "NResearch Inc", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "161K011", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Model number is product number." + }, + "lick_sensor": { + "device_type": "Lick Sensor", + "name": "Lick Sensor", + "serial_number": null, + "manufacturer": { + "name": "Other", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "lick_sensor_type": "Piezoelectric" + } + ] + } + ], + "cameras": [ + { + "name": "Forward", + "camera_target": "Face forward", + "camera": { + "device_type": "Detector", + "name": "Forward camera", + "serial_number": null, + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Forward lens", + "serial_number": null, + "manufacturer": { + "name": "Edmund Optics", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "01j1gwp17" + }, + "model": "86604", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "focal_length": "8.5", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Forward filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-715_LP-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Long pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.17365", + "0.98481", + "0", + "0.44709", + "0.07883", + "-0.89101", + "-0.87747", + "-0.15472", + "-0.45399" + ] + }, + { + "type": "translation", + "translation": [ + "0.154", + "0.03078", + "0.06346" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + }, + { + "name": "Side", + "camera_target": "Body", + "camera": { + "device_type": "Detector", + "name": "Side camera", + "serial_number": null, + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Side lens", + "serial_number": null, + "manufacturer": { + "name": "Navitar", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "focal_length": "6.0", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Side filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-747/33-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Band pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-1", + "0", + "0", + "0", + "0", + "-1", + "0", + "-1", + "0" + ] + }, + { + "type": "translation", + "translation": [ + "-0.03617", + "0.23887", + "-0.02535" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + }, + { + "name": "Eye", + "camera_target": "Eye", + "camera": { + "device_type": "Detector", + "name": "Eye camera", + "serial_number": null, + "manufacturer": { + "name": "Allied", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "G-032", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Max frame rate is at maximum resolution.", + "detector_type": "Camera", + "data_interface": "Ethernet", + "cooling": "None", + "computer_name": "127.0.0.1", + "max_frame_rate": "102", + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": "Monochrome", + "sensor_width": 7400, + "sensor_height": 7400, + "size_unit": "nanometer", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + }, + "lens": { + "device_type": "Lens", + "name": "Eye lens", + "serial_number": null, + "manufacturer": { + "name": "Infinity Photo-Optical", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "213073", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Model number is SKU.", + "focal_length": "6.0", + "focal_length_unit": "millimeter", + "size": null, + "lens_size_unit": "inch", + "optimized_wavelength_range": null, + "wavelength_unit": "nanometer", + "max_aperture": null + }, + "filter": { + "device_type": "Filter", + "name": "Eye filter", + "serial_number": null, + "manufacturer": { + "name": "Semrock", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "FF01-850/10-25", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "filter_type": "Band pass", + "diameter": null, + "width": null, + "height": null, + "size_unit": "millimeter", + "thickness": null, + "thickness_unit": "millimeter", + "filter_wheel_index": null, + "cut_off_wavelength": null, + "cut_on_wavelength": null, + "center_wavelength": null, + "wavelength_unit": "nanometer", + "description": null + }, + "position": { + "device_position_transformations": [ + { + "type": "rotation", + "rotation": [ + "-0.5", + "-0.86603", + "0", + "-0.366", + "0.21131", + "-0.90631", + "0.78489", + "-0.45315", + "-0.42262" + ] + }, + { + "type": "translation", + "translation": [ + "-0.14259", + "0.06209", + "0.09576" + ] + } + ], + "device_origin": "Located on face of the lens mounting surface in its center", + "device_axes": [ + { + "name": "X", + "direction": "Oriented so that it is parallel to the bottom edge of the sensor." + }, + { + "name": "Y", + "direction": "Pointing to the bottom edge of the sensor." + }, + { + "name": "Z", + "direction": "Positive moving away from the sensor towards the object." + } + ], + "notes": "The rotation matrix is represented as: a,b,c,d,e,f,g,h,i. Wherein a, b, c correspond to the first row of the matrix. The translation matrix is represented as: x,y,z." + } + } + ], + "enclosure": null, + "ephys_assemblies": [ + { + "name": "Ephys Assembly A", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly A Manipulator", + "serial_number": "SN45356", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeA", + "serial_number": "19192719051", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly B", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly B Manipulator", + "serial_number": "SN45484", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeB", + "serial_number": "19192719091", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly C", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly C Manipulator", + "serial_number": "SN45485", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeC", + "serial_number": "19192719721", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly D", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly D Manipulator", + "serial_number": "SN45359", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeD", + "serial_number": "18005117641", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly E", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys Assembly E Manipulator", + "serial_number": "SN45482", + "manufacturer": { + "name": "New Scale Technologies", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "06591-M-0004", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + "probes": [ + { + "device_type": "Ephys probe", + "name": "ProbeE", + "serial_number": "18005107542", + "manufacturer": { + "name": "Interuniversity Microelectronics Center", + "abbreviation": "IMEC", + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "02kcbn207" + }, + "model": "Neuropixels 1.0", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "probe_model": "Neuropixels 1.0", + "lasers": [], + "headstage": null + } + ] + }, + { + "name": "Ephys Assembly F", + "manipulator": { + "device_type": "Manipulator", + "name": "Ephys 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"Body LED", + "serial_number": null, + "manufacturer": { + "name": "Other", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "LZ4-40R308-0000", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 740, + "wavelength_unit": "nanometer" + }, + { + "device_type": "Light emitting diode", + "name": "Eye LED", + "serial_number": null, + "manufacturer": { + "name": "ams OSRAM", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "045d0h266" + }, + "model": "LZ4-40R608-0000", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "wavelength": 850, + "wavelength_unit": "nanometer" + }, + { + "device_type": "Laser", + "name": "Laser #0", + "serial_number": null, + "manufacturer": { + "name": "Vortran", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, 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null, + "manufacturer": { + "name": "Thorlabs", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "04gsnvb07" + }, + "model": "PDA25K", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Data interface is unknown.", + "detector_type": "Other", + "data_interface": "Other", + "cooling": "Air", + "computer_name": null, + "max_frame_rate": null, + "frame_rate_unit": "hertz", + "immersion": null, + "chroma": null, + "sensor_width": null, + "sensor_height": null, + "size_unit": "pixel", + "sensor_format": null, + "sensor_format_unit": null, + "bit_depth": null, + "bin_mode": "None", + "bin_width": null, + "bin_height": null, + "bin_unit": "pixel", + "gain": null, + "crop_width": null, + "crop_height": null, + "crop_unit": "pixel", + "recording_software": null, + "driver": null, + "driver_version": null + } + ], + "objectives": [], + "filters": [], + "lenses": [], + "digital_micromirror_devices": [], + "polygonal_scanners": [], + "pockels_cells": [], + "additional_devices": [ + { + "device_type": "Detector", + "name": "microphone", + "serial_number": null, + "manufacturer": { + "name": "Dodotronic", + "abbreviation": null, + "registry": null, + "registry_identifier": null + }, + "model": "MOM", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": "Data interface is unknown." + }, + { + "device_type": "Additional Imaging Device", + "name": "Galvo x", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + }, + { + "device_type": "Additional Imaging Device", + "name": "Galvo y", + "serial_number": null, + "manufacturer": null, + "model": null, + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null + } + ], + "daqs": [ + { + "device_type": "DAQ Device", + "name": "Sync", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6612", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "PCIe", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "Behavior", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6323", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "USB", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "BehaviorSync", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-6001", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "PCIe", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + }, + { + "device_type": "DAQ Device", + "name": "Opto", + "serial_number": null, + "manufacturer": { + "name": "National Instruments", + "abbreviation": null, + "registry": { + "name": "Research Organization Registry", + "abbreviation": "ROR" + }, + "registry_identifier": "026exqw73" + }, + "model": "NI-9264", + "path_to_cad": null, + "port_index": null, + "additional_settings": {}, + "notes": null, + "data_interface": "Ethernet", + "computer_name": "127.0.0.1", + "channels": [], + "firmware_version": null, + "hardware_version": null + } + ], + "calibrations": [], + "ccf_coordinate_transform": null, + "origin": "Bregma", + "rig_axes": [ + { + "name": "X", + "direction": "The world horizontal. Lays on the Mouse Sagittal Plane. Positive direction is towards the nose of the mouse. " + }, + { + "name": "Y", + "direction": "Perpendicular to Y. Positive direction is away from the nose of the mouse. " + }, + { + "name": "Z", + "direction": "Positive pointing up." + } + ], + "modalities": [ + { + "name": "Behavior", + "abbreviation": "behavior" + }, + { + "name": "Behavior videos", + "abbreviation": "behavior-videos" + }, + { + "name": "Extracellular electrophysiology", + "abbreviation": "ecephys" + } + ], + "notes": null +} \ No newline at end of file