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config.status
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#! /bin/sh
# Generated by configure.
# Run this file to recreate the current configuration.
# Compiler output produced by configure, useful for debugging
# configure, is in config.log if it exists.
debug=false
ac_cs_recheck=false
ac_cs_silent=false
SHELL=${CONFIG_SHELL-/bin/sh}
export SHELL
## -------------------- ##
## M4sh Initialization. ##
## -------------------- ##
# Be more Bourne compatible
DUALCASE=1; export DUALCASE # for MKS sh
if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
emulate sh
NULLCMD=:
# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
# is contrary to our usage. Disable this feature.
alias -g '${1+"$@"}'='"$@"'
setopt NO_GLOB_SUBST
else
case `(set -o) 2>/dev/null` in #(
*posix*) :
set -o posix ;; #(
*) :
;;
esac
fi
as_nl='
'
export as_nl
# Printing a long string crashes Solaris 7 /usr/bin/printf.
as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
# Prefer a ksh shell builtin over an external printf program on Solaris,
# but without wasting forks for bash or zsh.
if test -z "$BASH_VERSION$ZSH_VERSION" \
&& (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
as_echo='print -r --'
as_echo_n='print -rn --'
elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
as_echo='printf %s\n'
as_echo_n='printf %s'
else
if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
as_echo_n='/usr/ucb/echo -n'
else
as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
as_echo_n_body='eval
arg=$1;
case $arg in #(
*"$as_nl"*)
expr "X$arg" : "X\\(.*\\)$as_nl";
arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
esac;
expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
'
export as_echo_n_body
as_echo_n='sh -c $as_echo_n_body as_echo'
fi
export as_echo_body
as_echo='sh -c $as_echo_body as_echo'
fi
# The user is always right.
if test "${PATH_SEPARATOR+set}" != set; then
PATH_SEPARATOR=:
(PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
(PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
PATH_SEPARATOR=';'
}
fi
# IFS
# We need space, tab and new line, in precisely that order. Quoting is
# there to prevent editors from complaining about space-tab.
# (If _AS_PATH_WALK were called with IFS unset, it would disable word
# splitting by setting IFS to empty value.)
IFS=" "" $as_nl"
# Find who we are. Look in the path if we contain no directory separator.
as_myself=
case $0 in #((
*[\\/]* ) as_myself=$0 ;;
*) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
for as_dir in $PATH
do
IFS=$as_save_IFS
test -z "$as_dir" && as_dir=.
test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
done
IFS=$as_save_IFS
;;
esac
# We did not find ourselves, most probably we were run as `sh COMMAND'
# in which case we are not to be found in the path.
if test "x$as_myself" = x; then
as_myself=$0
fi
if test ! -f "$as_myself"; then
$as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
exit 1
fi
# Unset variables that we do not need and which cause bugs (e.g. in
# pre-3.0 UWIN ksh). But do not cause bugs in bash 2.01; the "|| exit 1"
# suppresses any "Segmentation fault" message there. '((' could
# trigger a bug in pdksh 5.2.14.
for as_var in BASH_ENV ENV MAIL MAILPATH
do eval test x\${$as_var+set} = xset \
&& ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
done
PS1='$ '
PS2='> '
PS4='+ '
# NLS nuisances.
LC_ALL=C
export LC_ALL
LANGUAGE=C
export LANGUAGE
# CDPATH.
(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
# as_fn_error STATUS ERROR [LINENO LOG_FD]
# ----------------------------------------
# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
# script with STATUS, using 1 if that was 0.
as_fn_error ()
{
as_status=$1; test $as_status -eq 0 && as_status=1
if test "$4"; then
as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
$as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
fi
$as_echo "$as_me: error: $2" >&2
as_fn_exit $as_status
} # as_fn_error
# as_fn_set_status STATUS
# -----------------------
# Set $? to STATUS, without forking.
as_fn_set_status ()
{
return $1
} # as_fn_set_status
# as_fn_exit STATUS
# -----------------
# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
as_fn_exit ()
{
set +e
as_fn_set_status $1
exit $1
} # as_fn_exit
# as_fn_unset VAR
# ---------------
# Portably unset VAR.
as_fn_unset ()
{
{ eval $1=; unset $1;}
}
as_unset=as_fn_unset
# as_fn_append VAR VALUE
# ----------------------
# Append the text in VALUE to the end of the definition contained in VAR. Take
# advantage of any shell optimizations that allow amortized linear growth over
# repeated appends, instead of the typical quadratic growth present in naive
# implementations.
if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
eval 'as_fn_append ()
{
eval $1+=\$2
}'
else
as_fn_append ()
{
eval $1=\$$1\$2
}
fi # as_fn_append
# as_fn_arith ARG...
# ------------------
# Perform arithmetic evaluation on the ARGs, and store the result in the
# global $as_val. Take advantage of shells that can avoid forks. The arguments
# must be portable across $(()) and expr.
if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
eval 'as_fn_arith ()
{
as_val=$(( $* ))
}'
else
as_fn_arith ()
{
as_val=`expr "$@" || test $? -eq 1`
}
fi # as_fn_arith
if expr a : '\(a\)' >/dev/null 2>&1 &&
test "X`expr 00001 : '.*\(...\)'`" = X001; then
as_expr=expr
else
as_expr=false
fi
if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
as_basename=basename
else
as_basename=false
fi
if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
as_dirname=dirname
else
as_dirname=false
fi
as_me=`$as_basename -- "$0" ||
$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
X"$0" : 'X\(//\)$' \| \
X"$0" : 'X\(/\)' \| . 2>/dev/null ||
$as_echo X/"$0" |
sed '/^.*\/\([^/][^/]*\)\/*$/{
s//\1/
q
}
/^X\/\(\/\/\)$/{
s//\1/
q
}
/^X\/\(\/\).*/{
s//\1/
q
}
s/.*/./; q'`
# Avoid depending upon Character Ranges.
as_cr_letters='abcdefghijklmnopqrstuvwxyz'
as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
as_cr_Letters=$as_cr_letters$as_cr_LETTERS
as_cr_digits='0123456789'
as_cr_alnum=$as_cr_Letters$as_cr_digits
ECHO_C= ECHO_N= ECHO_T=
case `echo -n x` in #(((((
-n*)
case `echo 'xy\c'` in
*c*) ECHO_T=' ';; # ECHO_T is single tab character.
xy) ECHO_C='\c';;
*) echo `echo ksh88 bug on AIX 6.1` > /dev/null
ECHO_T=' ';;
esac;;
*)
ECHO_N='-n';;
esac
rm -f conf$$ conf$$.exe conf$$.file
if test -d conf$$.dir; then
rm -f conf$$.dir/conf$$.file
else
rm -f conf$$.dir
mkdir conf$$.dir 2>/dev/null
fi
if (echo >conf$$.file) 2>/dev/null; then
if ln -s conf$$.file conf$$ 2>/dev/null; then
as_ln_s='ln -s'
# ... but there are two gotchas:
# 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
# 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
# In both cases, we have to default to `cp -pR'.
ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
as_ln_s='cp -pR'
elif ln conf$$.file conf$$ 2>/dev/null; then
as_ln_s=ln
else
as_ln_s='cp -pR'
fi
else
as_ln_s='cp -pR'
fi
rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
rmdir conf$$.dir 2>/dev/null
# as_fn_mkdir_p
# -------------
# Create "$as_dir" as a directory, including parents if necessary.
as_fn_mkdir_p ()
{
case $as_dir in #(
-*) as_dir=./$as_dir;;
esac
test -d "$as_dir" || eval $as_mkdir_p || {
as_dirs=
while :; do
case $as_dir in #(
*\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
*) as_qdir=$as_dir;;
esac
as_dirs="'$as_qdir' $as_dirs"
as_dir=`$as_dirname -- "$as_dir" ||
$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
X"$as_dir" : 'X\(//\)[^/]' \| \
X"$as_dir" : 'X\(//\)$' \| \
X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
$as_echo X"$as_dir" |
sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
s//\1/
q
}
/^X\(\/\/\)[^/].*/{
s//\1/
q
}
/^X\(\/\/\)$/{
s//\1/
q
}
/^X\(\/\).*/{
s//\1/
q
}
s/.*/./; q'`
test -d "$as_dir" && break
done
test -z "$as_dirs" || eval "mkdir $as_dirs"
} || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
} # as_fn_mkdir_p
if mkdir -p . 2>/dev/null; then
as_mkdir_p='mkdir -p "$as_dir"'
else
test -d ./-p && rmdir ./-p
as_mkdir_p=false
fi
# as_fn_executable_p FILE
# -----------------------
# Test if FILE is an executable regular file.
as_fn_executable_p ()
{
test -f "$1" && test -x "$1"
} # as_fn_executable_p
as_test_x='test -x'
as_executable_p=as_fn_executable_p
# Sed expression to map a string onto a valid CPP name.
as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
# Sed expression to map a string onto a valid variable name.
as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
exec 6>&1
## ----------------------------------- ##
## Main body of $CONFIG_STATUS script. ##
## ----------------------------------- ##
# Save the log message, to keep $0 and so on meaningful, and to
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by BamDeal $as_me 0.22, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
CONFIG_HEADERS = $CONFIG_HEADERS
CONFIG_LINKS = $CONFIG_LINKS
CONFIG_COMMANDS = $CONFIG_COMMANDS
$ $0 $@
on `(hostname || uname -n) 2>/dev/null | sed 1q`
"
# Files that config.status was made for.
config_files=" Makefile"
config_headers=" config.h"
config_commands=" depfiles"
ac_cs_usage="\
\`$as_me' instantiates files and other configuration actions
from templates according to the current configuration. Unless the files
and actions are specified as TAGs, all are instantiated by default.
Usage: $0 [OPTION]... [TAG]...
-h, --help print this help, then exit
-V, --version print version number and configuration settings, then exit
--config print configuration, then exit
-q, --quiet, --silent
do not print progress messages
-d, --debug don't remove temporary files
--recheck update $as_me by reconfiguring in the same conditions
--file=FILE[:TEMPLATE]
instantiate the configuration file FILE
--header=FILE[:TEMPLATE]
instantiate the configuration header FILE
Configuration files:
$config_files
Configuration headers:
$config_headers
Configuration commands:
$config_commands
Report bugs to <hewm2008@qq.com>."
ac_cs_config="'LDFLAGS=-L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/' 'CXXFLAGS=-I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/' 'CFLAGS=-I/include/'"
ac_cs_version="\
BamDeal config.status 0.22
configured by ./configure, generated by GNU Autoconf 2.69,
with options \"$ac_cs_config\"
Copyright (C) 2012 Free Software Foundation, Inc.
This config.status script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it."
ac_pwd='/ifshk7/BC_PS/heweiming/06.Delelop/BamDeal-0.21'
srcdir='.'
INSTALL='/usr/bin/install -c'
MKDIR_P='/bin/mkdir -p'
AWK='gawk'
test -n "$AWK" || AWK=awk
# The default lists apply if the user does not specify any file.
ac_need_defaults=:
while test $# != 0
do
case $1 in
--*=?*)
ac_option=`expr "X$1" : 'X\([^=]*\)='`
ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
ac_shift=:
;;
--*=)
ac_option=`expr "X$1" : 'X\([^=]*\)='`
ac_optarg=
ac_shift=:
;;
*)
ac_option=$1
ac_optarg=$2
ac_shift=shift
;;
esac
case $ac_option in
# Handling of the options.
-recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
ac_cs_recheck=: ;;
--version | --versio | --versi | --vers | --ver | --ve | --v | -V )
$as_echo "$ac_cs_version"; exit ;;
--config | --confi | --conf | --con | --co | --c )
$as_echo "$ac_cs_config"; exit ;;
--debug | --debu | --deb | --de | --d | -d )
debug=: ;;
--file | --fil | --fi | --f )
$ac_shift
case $ac_optarg in
*\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
'') as_fn_error $? "missing file argument" ;;
esac
as_fn_append CONFIG_FILES " '$ac_optarg'"
ac_need_defaults=false;;
--header | --heade | --head | --hea )
$ac_shift
case $ac_optarg in
*\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
esac
as_fn_append CONFIG_HEADERS " '$ac_optarg'"
ac_need_defaults=false;;
--he | --h)
# Conflict between --help and --header
as_fn_error $? "ambiguous option: \`$1'
Try \`$0 --help' for more information.";;
--help | --hel | -h )
$as_echo "$ac_cs_usage"; exit ;;
-q | -quiet | --quiet | --quie | --qui | --qu | --q \
| -silent | --silent | --silen | --sile | --sil | --si | --s)
ac_cs_silent=: ;;
# This is an error.
-*) as_fn_error $? "unrecognized option: \`$1'
Try \`$0 --help' for more information." ;;
*) as_fn_append ac_config_targets " $1"
ac_need_defaults=false ;;
esac
shift
done
ac_configure_extra_args=
if $ac_cs_silent; then
exec 6>/dev/null
ac_configure_extra_args="$ac_configure_extra_args --silent"
fi
if $ac_cs_recheck; then
set X /bin/sh './configure' 'LDFLAGS=-L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/' 'CXXFLAGS=-I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/' 'CFLAGS=-I/include/' $ac_configure_extra_args --no-create --no-recursion
shift
$as_echo "running CONFIG_SHELL=/bin/sh $*" >&6
CONFIG_SHELL='/bin/sh'
export CONFIG_SHELL
exec "$@"
fi
exec 5>>config.log
{
echo
sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
## Running $as_me. ##
_ASBOX
$as_echo "$ac_log"
} >&5
#
# INIT-COMMANDS
#
AMDEP_TRUE="" ac_aux_dir="."
# Handling of arguments.
for ac_config_target in $ac_config_targets
do
case $ac_config_target in
"config.h") CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
"depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
"Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
*) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
esac
done
# If the user did not use the arguments to specify the items to instantiate,
# then the envvar interface is used. Set only those that are not.
# We use the long form for the default assignment because of an extremely
# bizarre bug on SunOS 4.1.3.
if $ac_need_defaults; then
test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
fi
# Have a temporary directory for convenience. Make it in the build tree
# simply because there is no reason against having it here, and in addition,
# creating and moving files from /tmp can sometimes cause problems.
# Hook for its removal unless debugging.
# Note that there is a small window in which the directory will not be cleaned:
# after its creation but before its name has been assigned to `$tmp'.
$debug ||
{
tmp= ac_tmp=
trap 'exit_status=$?
: "${ac_tmp:=$tmp}"
{ test ! -d "$ac_tmp" || rm -fr "$ac_tmp"; } && exit $exit_status
' 0
trap 'as_fn_exit 1' 1 2 13 15
}
# Create a (secure) tmp directory for tmp files.
{
tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
test -d "$tmp"
} ||
{
tmp=./conf$$-$RANDOM
(umask 077 && mkdir "$tmp")
} || as_fn_error $? "cannot create a temporary directory in ." "$LINENO" 5
ac_tmp=$tmp
# Set up the scripts for CONFIG_FILES section.
# No need to generate them if there are no CONFIG_FILES.
# This happens for instance with `./config.status config.h'.
if test -n "$CONFIG_FILES"; then
ac_cr=`echo X | tr X '\015'`
# On cygwin, bash can eat \r inside `` if the user requested igncr.
# But we know of no other shell where ac_cr would be empty at this
# point, so we can use a bashism as a fallback.
if test "x$ac_cr" = x; then
eval ac_cr=\$\'\\r\'
fi
ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
ac_cs_awk_cr='\\r'
else
ac_cs_awk_cr=$ac_cr
fi
echo 'BEGIN {' >"$ac_tmp/subs1.awk" &&
cat >>"$ac_tmp/subs1.awk" <<\_ACAWK &&
S["am__EXEEXT_FALSE"]=""
S["am__EXEEXT_TRUE"]="#"
S["LTLIBOBJS"]=""
S["LIBOBJS"]=""
S["EGREP"]="/bin/grep -E"
S["GREP"]="/bin/grep"
S["RANLIB"]="ranlib"
S["LN_S"]="ln -s"
S["CPP"]="gcc -E"
S["am__fastdepCC_FALSE"]="#"
S["am__fastdepCC_TRUE"]=""
S["CCDEPMODE"]="depmode=gcc3"
S["ac_ct_CC"]="gcc"
S["CFLAGS"]="-I/include/"
S["CC"]="gcc"
S["am__fastdepCXX_FALSE"]="#"
S["am__fastdepCXX_TRUE"]=""
S["CXXDEPMODE"]="depmode=gcc3"
S["AMDEPBACKSLASH"]="\\"
S["AMDEP_FALSE"]="#"
S["AMDEP_TRUE"]=""
S["am__quote"]=""
S["am__include"]="include"
S["DEPDIR"]=".deps"
S["OBJEXT"]="o"
S["EXEEXT"]=""
S["ac_ct_CXX"]="g++"
S["CPPFLAGS"]=""
S["LDFLAGS"]="-L/ifshk4/BC_PUB/biosoft/newblc/01.Usr/lib/"
S["CXXFLAGS"]="-I/ifshk4/BC_PUB/biosoft/newblc/01.Usr/include/"
S["CXX"]="g++"
S["am__untar"]="${AMTAR} xf -"
S["am__tar"]="${AMTAR} chof - \"$$tardir\""
S["AMTAR"]="${SHELL} /ifshk7/BC_PS/heweiming/06.Delelop/BamDeal-0.21/missing --run tar"
S["am__leading_dot"]="."
S["SET_MAKE"]=""
S["AWK"]="gawk"
S["mkdir_p"]="/bin/mkdir -p"
S["MKDIR_P"]="/bin/mkdir -p"
S["INSTALL_STRIP_PROGRAM"]="$(install_sh) -c -s"
S["STRIP"]=""
S["install_sh"]="${SHELL} /ifshk7/BC_PS/heweiming/06.Delelop/BamDeal-0.21/install-sh"
S["MAKEINFO"]="${SHELL} /ifshk7/BC_PS/heweiming/06.Delelop/BamDeal-0.21/missing --run makeinfo"
S["AUTOHEADER"]="${SHELL} /ifshk7/BC_PS/heweiming/06.Delelop/BamDeal-0.21/missing --run autoheader"
S["AUTOMAKE"]="${SHELL} /ifshk7/BC_PS/heweiming/06.Delelop/BamDeal-0.21/missing --run automake-1.11"
S["AUTOCONF"]="${SHELL} /ifshk7/BC_PS/heweiming/06.Delelop/BamDeal-0.21/missing --run autoconf"
S["ACLOCAL"]="${SHELL} /ifshk7/BC_PS/heweiming/06.Delelop/BamDeal-0.21/missing --run aclocal-1.11"
S["VERSION"]="0.22"
S["PACKAGE"]="BamDeal"
S["CYGPATH_W"]="echo"
S["am__isrc"]=""
S["INSTALL_DATA"]="${INSTALL} -m 644"
S["INSTALL_SCRIPT"]="${INSTALL}"
S["INSTALL_PROGRAM"]="${INSTALL}"
S["target_alias"]=""
S["host_alias"]=""
S["build_alias"]=""
S["LIBS"]="-lhts -lz "
S["ECHO_T"]=""
S["ECHO_N"]="-n"
S["ECHO_C"]=""
S["DEFS"]="-DHAVE_CONFIG_H"
S["mandir"]="${datarootdir}/man"
S["localedir"]="${datarootdir}/locale"
S["libdir"]="${exec_prefix}/lib"
S["psdir"]="${docdir}"
S["pdfdir"]="${docdir}"
S["dvidir"]="${docdir}"
S["htmldir"]="${docdir}"
S["infodir"]="${datarootdir}/info"
S["docdir"]="${datarootdir}/doc/${PACKAGE_TARNAME}"
S["oldincludedir"]="/usr/include"
S["includedir"]="${prefix}/include"
S["localstatedir"]="${prefix}/var"
S["sharedstatedir"]="${prefix}/com"
S["sysconfdir"]="${prefix}/etc"
S["datadir"]="${datarootdir}"
S["datarootdir"]="${prefix}/share"
S["libexecdir"]="${exec_prefix}/libexec"
S["sbindir"]="${exec_prefix}/sbin"
S["bindir"]="${exec_prefix}/bin"
S["program_transform_name"]="s,x,x,"
S["prefix"]="/usr/local"
S["exec_prefix"]="${prefix}"
S["PACKAGE_URL"]=""
S["PACKAGE_BUGREPORT"]="hewm2008@qq.com"
S["PACKAGE_STRING"]="BamDeal 0.22"
S["PACKAGE_VERSION"]="0.22"
S["PACKAGE_TARNAME"]="bamdeal"
S["PACKAGE_NAME"]="BamDeal"
S["PATH_SEPARATOR"]=":"
S["SHELL"]="/bin/sh"
_ACAWK
cat >>"$ac_tmp/subs1.awk" <<_ACAWK &&
for (key in S) S_is_set[key] = 1
FS = ""
}
{
line = $ 0
nfields = split(line, field, "@")
substed = 0
len = length(field[1])
for (i = 2; i < nfields; i++) {
key = field[i]
keylen = length(key)
if (S_is_set[key]) {
value = S[key]
line = substr(line, 1, len) "" value "" substr(line, len + keylen + 3)
len += length(value) + length(field[++i])
substed = 1
} else
len += 1 + keylen
}
print line
}
_ACAWK
if sed "s/$ac_cr//" < /dev/null > /dev/null 2>&1; then
sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
else
cat
fi < "$ac_tmp/subs1.awk" > "$ac_tmp/subs.awk" \
|| as_fn_error $? "could not setup config files machinery" "$LINENO" 5
fi # test -n "$CONFIG_FILES"
# Set up the scripts for CONFIG_HEADERS section.
# No need to generate them if there are no CONFIG_HEADERS.
# This happens for instance with `./config.status Makefile'.
if test -n "$CONFIG_HEADERS"; then
cat >"$ac_tmp/defines.awk" <<\_ACAWK ||
BEGIN {
D["PACKAGE_NAME"]=" \"BamDeal\""
D["PACKAGE_TARNAME"]=" \"bamdeal\""
D["PACKAGE_VERSION"]=" \"0.22\""
D["PACKAGE_STRING"]=" \"BamDeal 0.22\""
D["PACKAGE_BUGREPORT"]=" \"hewm2008@qq.com\""
D["PACKAGE_URL"]=" \"\""
D["PACKAGE"]=" \"BamDeal\""
D["VERSION"]=" \"0.22\""
D["HAVE_LIBZ"]=" 1"
D["HAVE_LIBHTS"]=" 1"
D["STDC_HEADERS"]=" 1"
D["HAVE_SYS_TYPES_H"]=" 1"
D["HAVE_SYS_STAT_H"]=" 1"
D["HAVE_STDLIB_H"]=" 1"
D["HAVE_STRING_H"]=" 1"
D["HAVE_MEMORY_H"]=" 1"
D["HAVE_STRINGS_H"]=" 1"
D["HAVE_INTTYPES_H"]=" 1"
D["HAVE_STDINT_H"]=" 1"
D["HAVE_UNISTD_H"]=" 1"
D["HAVE_ZLIB_H"]=" 1"
D["HAVE_HTSLIB_SAM_H"]=" 1"
D["HAVE_HTSLIB_KSEQ_H"]=" 1"
D["HAVE_ZLIB_H"]=" 1"
D["HAVE_HTSLIB_KSTRING_H"]=" 1"
D["HAVE_STDLIB_H"]=" 1"
D["HAVE_STRING_H"]=" 1"
D["HAVE_UNISTD_H"]=" 1"
D["HAVE_HTSLIB_KSEQ_H"]=" 1"
D["HAVE_HTSLIB_SAM_H"]=" 1"
D["HAVE_HTSLIB_KSTRING_H"]=" 1"
D["HAVE__BOOL"]=" 1"
D["HAVE_STDLIB_H"]=" 1"
D["HAVE_MALLOC"]=" 1"
D["HAVE_STDLIB_H"]=" 1"
D["HAVE_REALLOC"]=" 1"
D["HAVE_MEMSET"]=" 1"
D["HAVE_REGCOMP"]=" 1"
D["HAVE_SQRT"]=" 1"
D["HAVE_STRDUP"]=" 1"
D["HAVE_STRNCASECMP"]=" 1"
D["HAVE_STRTOL"]=" 1"
for (key in D) D_is_set[key] = 1
FS = ""
}
/^[\t ]*#[\t ]*(define|undef)[\t ]+[_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ][_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]*([\t (]|$)/ {
line = $ 0
split(line, arg, " ")
if (arg[1] == "#") {
defundef = arg[2]
mac1 = arg[3]
} else {
defundef = substr(arg[1], 2)
mac1 = arg[2]
}
split(mac1, mac2, "(") #)
macro = mac2[1]
prefix = substr(line, 1, index(line, defundef) - 1)
if (D_is_set[macro]) {
# Preserve the white space surrounding the "#".
print prefix "define", macro P[macro] D[macro]
next
} else {
# Replace #undef with comments. This is necessary, for example,
# in the case of _POSIX_SOURCE, which is predefined and required
# on some systems where configure will not decide to define it.
if (defundef == "undef") {
print "/*", prefix defundef, macro, "*/"
next
}
}
}
{ print }
_ACAWK
as_fn_error $? "could not setup config headers machinery" "$LINENO" 5
fi # test -n "$CONFIG_HEADERS"
eval set X " :F $CONFIG_FILES :H $CONFIG_HEADERS :C $CONFIG_COMMANDS"
shift
for ac_tag
do
case $ac_tag in
:[FHLC]) ac_mode=$ac_tag; continue;;
esac
case $ac_mode$ac_tag in
:[FHL]*:*);;
:L* | :C*:*) as_fn_error $? "invalid tag \`$ac_tag'" "$LINENO" 5;;
:[FH]-) ac_tag=-:-;;
:[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
esac
ac_save_IFS=$IFS
IFS=:
set x $ac_tag
IFS=$ac_save_IFS
shift
ac_file=$1
shift
case $ac_mode in
:L) ac_source=$1;;
:[FH])
ac_file_inputs=
for ac_f
do
case $ac_f in
-) ac_f="$ac_tmp/stdin";;
*) # Look for the file first in the build tree, then in the source tree
# (if the path is not absolute). The absolute path cannot be DOS-style,
# because $ac_f cannot contain `:'.
test -f "$ac_f" ||
case $ac_f in
[\\/$]*) false;;
*) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
esac ||
as_fn_error 1 "cannot find input file: \`$ac_f'" "$LINENO" 5;;
esac
case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
as_fn_append ac_file_inputs " '$ac_f'"
done
# Let's still pretend it is `configure' which instantiates (i.e., don't
# use $as_me), people would be surprised to read:
# /* config.h. Generated by config.status. */
configure_input='Generated from '`
$as_echo "$*" | sed 's|^[^:]*/||;s|:[^:]*/|, |g'
`' by configure.'
if test x"$ac_file" != x-; then
configure_input="$ac_file. $configure_input"
{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $ac_file" >&5
$as_echo "$as_me: creating $ac_file" >&6;}
fi
# Neutralize special characters interpreted by sed in replacement strings.
case $configure_input in #(
*\&* | *\|* | *\\* )
ac_sed_conf_input=`$as_echo "$configure_input" |
sed 's/[\\\\&|]/\\\\&/g'`;; #(
*) ac_sed_conf_input=$configure_input;;
esac
case $ac_tag in
*:-:* | *:-) cat >"$ac_tmp/stdin" \
|| as_fn_error $? "could not create $ac_file" "$LINENO" 5 ;;
esac
;;
esac
ac_dir=`$as_dirname -- "$ac_file" ||
$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
X"$ac_file" : 'X\(//\)[^/]' \| \
X"$ac_file" : 'X\(//\)$' \| \
X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
$as_echo X"$ac_file" |
sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
s//\1/
q
}
/^X\(\/\/\)[^/].*/{
s//\1/
q
}
/^X\(\/\/\)$/{
s//\1/
q
}
/^X\(\/\).*/{
s//\1/
q
}
s/.*/./; q'`
as_dir="$ac_dir"; as_fn_mkdir_p
ac_builddir=.
case "$ac_dir" in
.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
*)
ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
# A ".." for each directory in $ac_dir_suffix.
ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
case $ac_top_builddir_sub in
"") ac_top_builddir_sub=. ac_top_build_prefix= ;;
*) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
esac ;;
esac
ac_abs_top_builddir=$ac_pwd
ac_abs_builddir=$ac_pwd$ac_dir_suffix
# for backward compatibility:
ac_top_builddir=$ac_top_build_prefix
case $srcdir in
.) # We are building in place.
ac_srcdir=.
ac_top_srcdir=$ac_top_builddir_sub
ac_abs_top_srcdir=$ac_pwd ;;
[\\/]* | ?:[\\/]* ) # Absolute name.
ac_srcdir=$srcdir$ac_dir_suffix;
ac_top_srcdir=$srcdir
ac_abs_top_srcdir=$srcdir ;;
*) # Relative name.
ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
ac_top_srcdir=$ac_top_build_prefix$srcdir
ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
esac
ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
case $ac_mode in
:F)
#
# CONFIG_FILE
#
case $INSTALL in
[\\/$]* | ?:[\\/]* ) ac_INSTALL=$INSTALL ;;
*) ac_INSTALL=$ac_top_build_prefix$INSTALL ;;
esac
ac_MKDIR_P=$MKDIR_P
case $MKDIR_P in
[\\/$]* | ?:[\\/]* ) ;;
*/*) ac_MKDIR_P=$ac_top_build_prefix$MKDIR_P ;;
esac
# If the template does not know about datarootdir, expand it.
# FIXME: This hack should be removed a few years after 2.60.
ac_datarootdir_hack=; ac_datarootdir_seen=
ac_sed_dataroot='
/datarootdir/ {
p
q
}
/@datadir@/p
/@docdir@/p
/@infodir@/p
/@localedir@/p
/@mandir@/p'
case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
*datarootdir*) ac_datarootdir_seen=yes;;
*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
$as_echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
ac_datarootdir_hack='
s&@datadir@&${datarootdir}&g
s&@docdir@&${datarootdir}/doc/${PACKAGE_TARNAME}&g
s&@infodir@&${datarootdir}/info&g
s&@localedir@&${datarootdir}/locale&g
s&@mandir@&${datarootdir}/man&g
s&\${datarootdir}&${prefix}/share&g' ;;
esac
ac_sed_extra="/^[ ]*VPATH[ ]*=[ ]*/{
h
s///
s/^/:/