From 8f794b204dcd526f103b98f18380d499769a3afe Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Tue, 17 Dec 2024 14:56:45 -0500
Subject: [PATCH] docs: note sge config sources

---
 config/eddie/README.md        | 5 +++++
 config/eddie/submit_script.sh | 1 +
 2 files changed, 6 insertions(+)
 create mode 100644 config/eddie/README.md

diff --git a/config/eddie/README.md b/config/eddie/README.md
new file mode 100644
index 0000000..0229f41
--- /dev/null
+++ b/config/eddie/README.md
@@ -0,0 +1,5 @@
+these config files were adapted from the following sources:
+
+- https://github.com/Snakemake-Profiles/sge/tree/e8175c52c0566f4d569e132e748568283c799f78
+- https://github.com/riboviz/riboviz/tree/476ee8c8fed775a795e08f24863adfee7355c486/jobs
+- https://nf-co.re/configs/eddie/
diff --git a/config/eddie/submit_script.sh b/config/eddie/submit_script.sh
index 4de3ddc..148bcef 100644
--- a/config/eddie/submit_script.sh
+++ b/config/eddie/submit_script.sh
@@ -7,6 +7,7 @@
 #$ -o logs/$JOB_NAME-$JOB_ID-$HOSTNAME.out
 #$ -e logs/$JOB_NAME-$JOB_ID-$HOSTNAME.err
 
+. /etc/profile.d/modules.sh
 $MODULE_LOAD
 $EXPORT_SING_CACHE_DIR_CMD