From 9715cb0018af95d5146414f239bc3487c457fe1f Mon Sep 17 00:00:00 2001 From: Kelly Sovacool Date: Wed, 16 Oct 2024 16:53:07 -0400 Subject: [PATCH] fix: updgrade container with PYTHONPATH set to conda lib --- config/biowulf/config.yaml | 4 ++-- config/fnlcr/config.yaml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/config/biowulf/config.yaml b/config/biowulf/config.yaml index da1eb19..5951286 100644 --- a/config/biowulf/config.yaml +++ b/config/biowulf/config.yaml @@ -4,7 +4,7 @@ workdir: "WORKDIR" # temporary directory for intermediate files that are not saved -tempdir: '/lscratch/$SLURM_JOB_ID' +tempdir: "/lscratch/$SLURM_JOB_ID" # tab delimited samples file ... should have the following 3 columns # sampleName path_to_R1_fastq path_to_R2_fastq @@ -128,4 +128,4 @@ containers: picard: "docker://nciccbr/ccbr_picard_2.27.5:v1" R: "docker://nciccbr/ccbr_r_4.3.0:v1" star: "docker://nciccbr/ccbr_star_2.7.6a:latest" - star_ucsc_cufflinks: "docker://nciccbr/charlie_star_ucsc_cufflinks:v0.4.0" + star_ucsc_cufflinks: "docker://nciccbr/charlie_star_ucsc_cufflinks:v0.4.1" diff --git a/config/fnlcr/config.yaml b/config/fnlcr/config.yaml index de47366..da36ff0 100644 --- a/config/fnlcr/config.yaml +++ b/config/fnlcr/config.yaml @@ -128,4 +128,4 @@ containers: picard: "docker://nciccbr/ccbr_picard_2.27.5:v1" R: "docker://nciccbr/ccbr_r_4.3.0:v1" star: "docker://nciccbr/ccbr_star_2.7.6a:latest" - star_ucsc_cufflinks: "docker://nciccbr/charlie_star_ucsc_cufflinks:v0.4.0" + star_ucsc_cufflinks: "docker://nciccbr/charlie_star_ucsc_cufflinks:v0.4.1"