From a89b1ff3dce23a4da8beafd1daa87c8110e97258 Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Tue, 31 Dec 2024 12:20:41 -0500
Subject: [PATCH] fix(eddie): add Taka's venv to path

temporary workaround until we find out how to make this work more generally
---
 charlie | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/charlie b/charlie
index 4a635ad..594ff11 100755
--- a/charlie
+++ b/charlie
@@ -626,7 +626,8 @@ function main(){
   elif [ "$PLATFORM" == "eddie" ]; then
     # TODO fill in other variables for eddie
     CLUSTER_PROFILE="config/eddie"
-    MODULE_LOAD="module load singularity"
+    PATH_PREPEND='export PATH="/home/ttakanob/py3.8_venv/bin/:$PATH"'
+    MODULE_LOAD="module load singularity; $PATH_PREPEND"
     # python & snakemake are already in Taka's path in his bashrc
     TEMP_DIR="/exports/eddie/scratch/$USER"
   else