diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 701fad8..6c4e157 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -26,7 +26,9 @@ jobs: python-version: ${{ matrix.python-version }} cache: "pip" - name: Install nextflow - uses: nf-core/setup-nextflow@v1 + uses: nf-core/setup-nextflow@v2 + with: + version: "24.10.2" - name: Install dependencies run: | python -m pip install --upgrade pip setuptools diff --git a/.tests/interval.bed b/.tests/interval.bed index 68b2e9b..91f2661 100644 --- a/.tests/interval.bed +++ b/.tests/interval.bed @@ -1,10 +1,10 @@ -chr1 10000 207666 . intersection ACGTmer 500 + -chr1 257666 297968 . intersection ACGTmer 500 + -chr1 347968 535988 . intersection ACGTmer 500 + -chr1 585988 2702781 . intersection ACGTmer 500 + -chr1 2746290 12954384 . intersection ACGTmer 500 + -chr1 13004384 16799163 . intersection ACGTmer 500 + -chr1 16849163 29552233 . intersection ACGTmer 500 + -chr1 29553835 121976459 . intersection ACGTmer 500 + -chr1 122026459 124977944 . intersection ACGTmer 500 + -chr1 124978326 125130246 . intersection ACGTmer 500 + +chr22 10510000 10784643 . intersection ACGTmer 500 + +chr22 10834643 10874572 . intersection ACGTmer 500 + +chr22 10924572 10966724 . intersection ACGTmer 500 + +chr22 11016724 11068987 . intersection ACGTmer 500 + +chr22 11118987 11160921 . intersection ACGTmer 500 + +chr22 11210921 11378056 . intersection ACGTmer 500 + +chr22 11428056 11497337 . intersection ACGTmer 500 + +chr22 11547337 11631288 . intersection ACGTmer 500 + +chr22 11681288 11724629 . intersection ACGTmer 500 + +chr22 11774629 11977555 . intersection ACGTmer 500 +