From 7e672b99ab43a1623109a3348b83bc30e9815ad6 Mon Sep 17 00:00:00 2001
From: Darryl Nousome <dnousome@gmail.com>
Date: Wed, 4 Dec 2024 10:56:34 -0500
Subject: [PATCH] fix: genomeref for freec

---
 modules/local/freec.nf | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/modules/local/freec.nf b/modules/local/freec.nf
index 56ce1b5..93b56c3 100644
--- a/modules/local/freec.nf
+++ b/modules/local/freec.nf
@@ -1,5 +1,7 @@
 //FREEC
 //mm10 Paired-Sequenza, FREEC-tumor only
+GENOMEREF = file(params.genomes[params.genome].genome)
+
 //CNV Intervals
 if (params.intervals){
     CNVTARGETS = file(params.intervals)