diff --git a/nextflow.config b/nextflow.config index d52c2d0..9f5c5c6 100644 --- a/nextflow.config +++ b/nextflow.config @@ -57,6 +57,7 @@ params { callers = "mutect2,octopus,lofreq,muse,sage,vardict,varscan" tonlycallers = "mutect2,octopus,vardict,varscan" cnvcallers = "purple,sequenza,freec" + svcallers = "manta,svaba" intervals = null publish_dir_mode = 'symlink' outdir = 'results'