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renee cache -- broken path to containers #162

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kelly-sovacool opened this issue Oct 25, 2024 · 0 comments · Fixed by #163
Closed

renee cache -- broken path to containers #162

kelly-sovacool opened this issue Oct 25, 2024 · 0 comments · Fixed by #163
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module load ccbrpipeliner/7
renee cache --sif-cache /data/CCBR_Pipeliner/SIFs/
[+] Loading singularity  4.1.5  on cn0056 
[+] Loading snakemake  7.32.4 
Python version: 3.11.3
RENEE (v2.6.0)
Traceback (most recent call last):
  File "/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/RENEE/.v2.6.0/main.py", line 16, in <module>
    sys.exit(main())
             ^^^^^^
  File "/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/RENEE/.v2.6.0/src/renee/__main__.py", line 1490, in main
    args.func(args)
  File "/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/RENEE/.v2.6.0/src/renee/__main__.py", line 440, in cache
    with open(images, "r") as fh:
         ^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/RENEE/.v2.6.0/src/renee/config/containers/images.json'
@kelly-sovacool kelly-sovacool added the bug Something isn't working label Oct 25, 2024
@kelly-sovacool kelly-sovacool self-assigned this Oct 25, 2024
@kopardev kopardev added the RENEE RepoName label Oct 25, 2024
@kelly-sovacool kelly-sovacool added this to the 2024-10 milestone Oct 25, 2024
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