C14SunBurst.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## MeSH Tree"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 37,
   "metadata": {},
   "outputs": [],
   "source": [
    "import json\n",
    "import sys\n",
    "import time\n",
    "import pandas as pd"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {},
   "outputs": [],
   "source": [
    "meshtree = \"data/mtrees2018.bin\"  # to change to mtrees2017.bin\n",
    "m2pfile =\"data/mesh2pmid_stat.json\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 39,
   "metadata": {},
   "outputs": [],
   "source": [
    "with open(m2pfile, 'r') as ff:\n",
    "    m2p = json.load(ff)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 40,
   "metadata": {},
   "outputs": [],
   "source": [
    "csvTree = []\n",
    "id2name = {}\n",
    "\n",
    "\n",
    "with open(meshtree, \"r\") as ftree:\n",
    "    for line in ftree:\n",
    "        term_tree = line.strip().split(\";\")\n",
    "        cur_term = term_tree[0]\n",
    "        cur_tree = term_tree[1]\n",
    "        \n",
    "        \n",
    "        csvTree.append({'id':cur_tree ,'name':cur_term})\n",
    "        id2name.update({cur_tree : cur_term})\n",
    "        \n",
    "        "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 41,
   "metadata": {},
   "outputs": [],
   "source": [
    "ROOTS = {\"Cardiovascular Diseases\": \"C14\"}\n",
    "\n",
    "for key,value in ROOTS.items(): \n",
    "    fname =\"CVD\"\n",
    "    root = value\n",
    "    idata = []\n",
    "    r = root.split('.')\n",
    "    ln = len(r)\n",
    "\n",
    "    # first node   \n",
    "    nm = id2name[r[0]]\n",
    "    tt = r[0]\n",
    "    #idata.append({'id': nm, 'value': tt})\n",
    "       \n",
    "    # remaining nodes   \n",
    "    for t in r[1:]:\n",
    "        tt = tt + '.' + t\n",
    "        nm = nm + '.' +  id2name[tt]\n",
    "        #idata.append({'id': nm, 'value': tt})\n",
    "        \n",
    "        \n",
    "                \n",
    "    # find root name <---------------------------------------\n",
    "    root_name = id2name[r[0]] \n",
    "    tt = r[0]\n",
    "    for t in r[1:]:\n",
    "        tt = tt + '.' + t\n",
    "        root_name = root_name + '.' +  id2name[tt]\n",
    "        \n",
    "        \n",
    "            \n",
    "    # created intended tree <-------------------------------------\n",
    "    for key,values in id2name.items():\n",
    "        \n",
    "        items = key.split('.')\n",
    "        ir = items[0]\n",
    "        \n",
    "        for t in items[1:ln]:\n",
    "            ir = ir + '.' + t\n",
    "            \n",
    "        if len(items) > ln and ir == root:\n",
    "                    \n",
    "                    ID = root\n",
    "                    l = len(items)\n",
    "                    \n",
    "                    for i in range(ln,l):\n",
    "                        ID = ID + '.' + items[i]\n",
    "                        #print(items,ID)\n",
    "                        new_name  = id2name[ID].replace(\", \",\"|\")\n",
    "                        new_name  = new_name.replace(\"-\",\"~\")\n",
    "                        new_name = new_name.replace(\" \",\"_\")\n",
    "                        \n",
    "                        if i == ln:\n",
    "                            name =  new_name\n",
    "                            \n",
    "                        else:\n",
    "                            #print(id2name[ID].replace(\", \", \"_\"))\n",
    "                            \n",
    "                            if len(id2name[ID].split())> 2:\n",
    "                                name = name + '.' + new_name \n",
    "                            else:\n",
    "                                name = name + '.' + new_name\n",
    "                        \n",
    "                        \n",
    "                    idata.append({'id': str(name),'value': ID})\n",
    "                \n",
    "                \n",
    "                    \n",
    "                \n",
    "                \n",
    "    # save file per root <-------------------------------------------\n",
    "    SM = pd.DataFrame(idata)\n",
    "    SM = SM.sort_values( ['value'],axis =0,ascending =True)\n",
    "    SM = SM.set_index('id')\n",
    "    SM.to_csv('data/' + fname + '.csv') "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 42,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "638"
      ]
     },
     "execution_count": 42,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "sid = list(SM.index)\n",
    "sval = list(SM['value'])\n",
    "allid = []\n",
    "for t in sval:\n",
    "    allid.append(t)\n",
    "uid = allid\n",
    "len(uid)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Unique"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 46,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "457 run again\n"
     ]
    }
   ],
   "source": [
    "for item in allid:\n",
    "    tt = item.split(\".\")\n",
    "    term =tt[0]\n",
    "    for it in tt[1:-1]:\n",
    "            term = term +\".\" + it\n",
    "            if term in uid:\n",
    "                uid.remove(term)\n",
    "                #print(term,\"removed left \",len(uid))\n",
    "\n",
    "print(len(uid), \"run again\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 47,
   "metadata": {},
   "outputs": [],
   "source": [
    "DATA = []\n",
    "for u_id in uid:\n",
    "    for v,i in zip(sval,sid):\n",
    "        if u_id == v:\n",
    "            \n",
    "            last = i.split(\".\")[-1]\n",
    "            last = last.replace(\"_\",\" \")\n",
    "            last = last.replace(\"~\",\"-\")\n",
    "            last = last.replace(\"|\",\", \")\n",
    "            \n",
    "            #print(last)\n",
    "            count = m2p[last]\n",
    "            \n",
    "            DATA.append({\"id\": i.replace(\".\",\"-\"),\"nid\":v,\"value\":count})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 48,
   "metadata": {},
   "outputs": [],
   "source": [
    "DF = pd.DataFrame(DATA)\n",
    "DF = DF.sort_values(['nid'])\n",
    "DF = DF.drop(['nid'], axis =1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 49,
   "metadata": {},
   "outputs": [],
   "source": [
    "DF = DF.set_index('id')\n",
    "DF.to_csv('data/Flare.csv') "
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Color"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 50,
   "metadata": {},
   "outputs": [],
   "source": [
    "ALL = []\n",
    "for item in list(DF.index):\n",
    "    LL = item.split(\"-\")\n",
    "    for item in LL:\n",
    "        if item not in ALL:\n",
    "            ALL.append(item)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 51,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "424"
      ]
     },
     "execution_count": 51,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(ALL)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 52,
   "metadata": {},
   "outputs": [],
   "source": [
    "import random as random\n",
    "Colors = {}\n",
    "for item in ALL:\n",
    "    color = \"%06x\" % random.randint(0, 0xFFFFFF)\n",
    "    Colors.update({item: \"#\"+color})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 53,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "{'Cardiovascular_Abnormalities': '#30f7fa',\n",
       " 'Heart_Defects|Congenital': '#9c09a3',\n",
       " '22q11_Deletion_Syndrome': '#4a6835',\n",
       " 'DiGeorge_Syndrome': '#15c9f3',\n",
       " 'Alagille_Syndrome': '#47b90e',\n",
       " 'Aortic_Coarctation': '#5bdeef',\n",
       " 'Arrhythmogenic_Right_Ventricular_Dysplasia': '#a83630',\n",
       " 'Barth_Syndrome': '#04d4d5',\n",
       " 'Cor_Triatriatum': '#9859b5',\n",
       " 'Coronary_Vessel_Anomalies': '#4fd95f',\n",
       " 'Bland_White_Garland_Syndrome': '#62773d',\n",
       " 'Myocardial_Bridging': '#dfa7a9',\n",
       " 'Crisscross_Heart': '#af1cc9',\n",
       " 'Dextrocardia': '#57fb26',\n",
       " 'Kartagener_Syndrome': '#a0d74d',\n",
       " 'Ductus_Arteriosus|Patent': '#5368be',\n",
       " 'Ebstein_Anomaly': '#6c1cd9',\n",
       " 'Ectopia_Cordis': '#589565',\n",
       " 'Eisenmenger_Complex': '#7b2d1b',\n",
       " 'Heart_Septal_Defects': '#28653c',\n",
       " 'Aortopulmonary_Septal_Defect': '#d85b59',\n",
       " 'Truncus_Arteriosus|Persistent': '#dbbfed',\n",
       " 'Endocardial_Cushion_Defects': '#b30ec6',\n",
       " 'Heart_Septal_Defects|Atrial': '#01fd98',\n",
       " 'Foramen_Ovale|Patent': '#27c0af',\n",
       " 'Lutembacher_Syndrome': '#20e6e3',\n",
       " 'Heart_Septal_Defects|Ventricular': '#623e8f',\n",
       " 'Heterotaxy_Syndrome': '#5f95bd',\n",
       " 'Hypoplastic_Left_Heart_Syndrome': '#c10218',\n",
       " 'Isolated_Noncompaction_of_the_Ventricular_Myocardium': '#5eab4c',\n",
       " 'LEOPARD_Syndrome': '#9198a9',\n",
       " 'Levocardia': '#7ebc5b',\n",
       " 'Marfan_Syndrome': '#b69e04',\n",
       " 'Noonan_Syndrome': '#3111b1',\n",
       " 'Tetralogy_of_Fallot': '#01bdc9',\n",
       " 'Transposition_of_Great_Vessels': '#e8064c',\n",
       " 'Double_Outlet_Right_Ventricle': '#b9e939',\n",
       " 'Tricuspid_Atresia': '#715774',\n",
       " 'Trilogy_of_Fallot': '#e49718',\n",
       " 'Trisomy_13_Syndrome': '#0675bd',\n",
       " 'Trisomy_18_Syndrome': '#63af8c',\n",
       " 'Turner_Syndrome': '#c46957',\n",
       " 'Vascular_Malformations': '#b2cc36',\n",
       " 'Arteriovenous_Malformations': '#130abd',\n",
       " 'Arteriovenous_Fistula': '#851ccd',\n",
       " 'Carotid~Cavernous_Sinus_Fistula': '#e5caa1',\n",
       " 'Intracranial_Arteriovenous_Malformations': '#b35163',\n",
       " 'Vein_of_Galen_Malformations': '#6ef099',\n",
       " 'Central_Nervous_System_Vascular_Malformations': '#927328',\n",
       " 'Central_Nervous_System_Venous_Angioma': '#cd8746',\n",
       " 'Hemangioma|Cavernous|Central_Nervous_System': '#14030f',\n",
       " 'Sinus_Pericranii': '#8f998e',\n",
       " 'May~Thurner_Syndrome': '#59ce1e',\n",
       " 'Median_Arcuate_Ligament_Syndrome': '#e77d08',\n",
       " 'Pulmonary_Atresia': '#142ea3',\n",
       " 'Scimitar_Syndrome': '#8c122b',\n",
       " 'Single_Umbilical_Artery': '#bfa8cb',\n",
       " 'Vascular_Fistula': '#8bd07b',\n",
       " 'Arterio~Arterial_Fistula': '#02beae',\n",
       " 'Vascular_Ring': '#757d38',\n",
       " 'Cardiovascular_Infections': '#8b386e',\n",
       " 'Endocarditis|Bacterial': '#8e0395',\n",
       " 'Endocarditis|Subacute_Bacterial': '#0099b3',\n",
       " 'Syphilis|Cardiovascular': '#e39413',\n",
       " 'Tuberculosis|Cardiovascular': '#423474',\n",
       " 'Pericarditis|Tuberculous': '#628772',\n",
       " 'Heart_Diseases': '#df65f0',\n",
       " 'Arrhythmias|Cardiac': '#eea3aa',\n",
       " 'Arrhythmia|Sinus': '#acd952',\n",
       " 'Sick_Sinus_Syndrome': '#ceaa2b',\n",
       " 'Sinus_Arrest|Cardiac': '#e79020',\n",
       " 'Atrial_Fibrillation': '#1feff6',\n",
       " 'Atrial_Flutter': '#115619',\n",
       " 'Bradycardia': '#072160',\n",
       " 'Brugada_Syndrome': '#fdce65',\n",
       " 'Cardiac_Complexes|Premature': '#497635',\n",
       " 'Atrial_Premature_Complexes': '#9ecca9',\n",
       " 'Ventricular_Premature_Complexes': '#47d3dd',\n",
       " 'Commotio_Cordis': '#47043d',\n",
       " 'Heart_Block': '#bc7771',\n",
       " 'Adams~Stokes_Syndrome': '#8a1a9f',\n",
       " 'Atrioventricular_Block': '#27de95',\n",
       " 'Bundle~Branch_Block': '#1604cd',\n",
       " 'Interatrial_Block': '#c5e3bb',\n",
       " 'Sinoatrial_Block': '#3995fe',\n",
       " 'Long_QT_Syndrome': '#b7e971',\n",
       " 'Andersen_Syndrome': '#20d0a8',\n",
       " 'Jervell~Lange_Nielsen_Syndrome': '#488734',\n",
       " 'Romano~Ward_Syndrome': '#5344b9',\n",
       " 'Parasystole': '#005f08',\n",
       " 'Pre~Excitation_Syndromes': '#491e0f',\n",
       " 'Lown~Ganong~Levine_Syndrome': '#cc3f43',\n",
       " 'Pre~Excitation|Mahaim~Type': '#24f554',\n",
       " 'Wolff~Parkinson~White_Syndrome': '#cc0ef9',\n",
       " 'Tachycardia': '#20b404',\n",
       " 'Tachycardia|Paroxysmal': '#658226',\n",
       " 'Tachycardia|Reciprocating': '#9784db',\n",
       " 'Tachycardia|Atrioventricular_Nodal_Reentry': '#78d8e2',\n",
       " 'Tachycardia|Sinoatrial_Nodal_Reentry': '#4fc13f',\n",
       " 'Tachycardia|Supraventricular': '#d92425',\n",
       " 'Tachycardia|Ectopic_Atrial': '#6be7f3',\n",
       " 'Tachycardia|Ectopic_Junctional': '#f05489',\n",
       " 'Tachycardia|Sinus': '#9f31f3',\n",
       " 'Tachycardia|Ventricular': '#052eb5',\n",
       " 'Accelerated_Idioventricular_Rhythm': '#291bc5',\n",
       " 'Torsades_de_Pointes': '#929e94',\n",
       " 'Ventricular_Fibrillation': '#b9f688',\n",
       " 'Ventricular_Flutter': '#434926',\n",
       " 'Carcinoid_Heart_Disease': '#43b283',\n",
       " 'Cardiac_Conduction_System_Disease': '#a3d037',\n",
       " 'Cardiac_Output|High': '#5e2c80',\n",
       " 'Cardiac_Output|Low': '#5b0adf',\n",
       " 'Cardiac_Tamponade': '#a703e3',\n",
       " 'Cardiomegaly': '#23ae55',\n",
       " 'Cardiomyopathy|Dilated': '#cc8819',\n",
       " 'Hypertrophy|Left_Ventricular': '#0749ce',\n",
       " 'Hypertrophy|Right_Ventricular': '#8ad3d4',\n",
       " 'Cardiomyopathies': '#486279',\n",
       " 'Cardiomyopathy|Alcoholic': '#b1ff81',\n",
       " 'Cardiomyopathy|Hypertrophic': '#40e07d',\n",
       " 'Cardiomyopathy|Hypertrophic|Familial': '#11592e',\n",
       " 'Cardiomyopathy|Restrictive': '#6835dd',\n",
       " 'Chagas_Cardiomyopathy': '#1655ef',\n",
       " 'Diabetic_Cardiomyopathies': '#551ac6',\n",
       " 'Endocardial_Fibroelastosis': '#444bec',\n",
       " 'Endomyocardial_Fibrosis': '#8420a6',\n",
       " 'Glycogen_Storage_Disease_Type_IIb': '#dd591b',\n",
       " 'Kearns~Sayre_Syndrome': '#9515f8',\n",
       " 'Myocardial_Reperfusion_Injury': '#a97a5c',\n",
       " 'Myocarditis': '#1a0a20',\n",
       " 'Sarcoglycanopathies': '#c5bc52',\n",
       " 'Endocarditis': '#5d50b6',\n",
       " 'Endocarditis|Non~Infective': '#8c840e',\n",
       " 'Heart_Aneurysm': '#1db6c8',\n",
       " 'Heart_Arrest': '#154116',\n",
       " 'Death|Sudden|Cardiac': '#863408',\n",
       " 'Karoshi_Death': '#d79a30',\n",
       " 'Out~of~Hospital_Cardiac_Arrest': '#97294d',\n",
       " 'Heart_Failure': '#7f8b15',\n",
       " 'Cardio~Renal_Syndrome': '#c24349',\n",
       " 'Dyspnea|Paroxysmal': '#090b98',\n",
       " 'Edema|Cardiac': '#cf56c1',\n",
       " 'Heart_Failure|Diastolic': '#626ee4',\n",
       " 'Heart_Failure|Systolic': '#999123',\n",
       " 'Heart_Neoplasms': '#474cde',\n",
       " 'Carney_Complex': '#541fa2',\n",
       " 'Heart_Rupture': '#4ae599',\n",
       " 'Heart_Rupture|Post~Infarction': '#4d12c8',\n",
       " 'Ventricular_Septal_Rupture': '#4f2bf4',\n",
       " 'Heart_Valve_Diseases': '#bcbeb0',\n",
       " 'Aortic_Valve_Insufficiency': '#dc6a6a',\n",
       " 'Aortic_Valve_Stenosis': '#0786b4',\n",
       " 'Aortic_Stenosis|Subvalvular': '#1624d8',\n",
       " 'Discrete_Subaortic_Stenosis': '#aa3537',\n",
       " 'Aortic_Stenosis|Supravalvular': '#5307e9',\n",
       " 'Williams_Syndrome': '#186a83',\n",
       " 'Heart_Valve_Prolapse': '#2fc5b0',\n",
       " 'Aortic_Valve_Prolapse': '#fc663e',\n",
       " 'Mitral_Valve_Prolapse': '#5985ab',\n",
       " 'Tricuspid_Valve_Prolapse': '#5d745d',\n",
       " 'Mitral_Valve_Insufficiency': '#eb5772',\n",
       " 'Mitral_Valve_Stenosis': '#78f72c',\n",
       " 'Pulmonary_Valve_Insufficiency': '#e62537',\n",
       " 'Pulmonary_Valve_Stenosis': '#075391',\n",
       " 'Pulmonary_Subvalvular_Stenosis': '#a260e8',\n",
       " 'Tricuspid_Valve_Insufficiency': '#529600',\n",
       " 'Tricuspid_Valve_Stenosis': '#6c8703',\n",
       " 'Myocardial_Ischemia': '#a2d60a',\n",
       " 'Acute_Coronary_Syndrome': '#ebc5a1',\n",
       " 'Angina_Pectoris': '#1c1d88',\n",
       " 'Angina|Unstable': '#4da801',\n",
       " 'Angina_Pectoris|Variant': '#00e44f',\n",
       " 'Angina|Stable': '#e58f94',\n",
       " 'Microvascular_Angina': '#ea9760',\n",
       " 'Coronary_Disease': '#9e95a5',\n",
       " 'Coronary_Aneurysm': '#c100a9',\n",
       " 'Coronary_Artery_Disease': '#15ed94',\n",
       " 'Coronary_Occlusion': '#1825bc',\n",
       " 'Coronary_Stenosis': '#85dccd',\n",
       " 'Coronary_Restenosis': '#6c01ee',\n",
       " 'Coronary_Thrombosis': '#b987a0',\n",
       " 'Coronary_Vasospasm': '#7b2f5e',\n",
       " 'Coronary~Subclavian_Steal_Syndrome': '#12827e',\n",
       " 'Kounis_Syndrome': '#487e90',\n",
       " 'Myocardial_Infarction': '#61d2f2',\n",
       " 'Anterior_Wall_Myocardial_Infarction': '#19561f',\n",
       " 'Inferior_Wall_Myocardial_Infarction': '#f2eab1',\n",
       " 'Non~ST_Elevated_Myocardial_Infarction': '#f4c9de',\n",
       " 'Shock|Cardiogenic': '#5ec7eb',\n",
       " 'ST_Elevation_Myocardial_Infarction': '#cc7af7',\n",
       " 'Myocardial_Stunning': '#3c1ac9',\n",
       " 'Pericardial_Effusion': '#dc4e2d',\n",
       " 'Pericarditis': '#ef0b19',\n",
       " 'Pericarditis|Constrictive': '#17f4df',\n",
       " 'Pneumopericardium': '#48ca08',\n",
       " 'Postpericardiotomy_Syndrome': '#35d909',\n",
       " 'Pulmonary_Heart_Disease': '#d8cf9e',\n",
       " 'Rheumatic_Heart_Disease': '#ea0117',\n",
       " 'Ventricular_Dysfunction': '#586b93',\n",
       " 'Ventricular_Dysfunction|Left': '#a04a43',\n",
       " 'Takotsubo_Cardiomyopathy': '#3d027f',\n",
       " 'Ventricular_Dysfunction|Right': '#d7b045',\n",
       " 'Ventricular_Outflow_Obstruction': '#f52153',\n",
       " 'Pregnancy_Complications|Cardiovascular': '#5905a1',\n",
       " 'Embolism|Amniotic_Fluid': '#7936ed',\n",
       " 'Vascular_Diseases': '#764d6f',\n",
       " 'Aneurysm': '#2c81dd',\n",
       " 'Aneurysm|Dissecting': '#1439fd',\n",
       " 'Carotid_Artery|Internal|Dissection': '#e1fbf5',\n",
       " 'Loeys~Dietz_Syndrome': '#9ade4a',\n",
       " 'Vertebral_Artery_Dissection': '#830c42',\n",
       " 'Aneurysm|False': '#068522',\n",
       " 'Aneurysm|Infected': '#7494c9',\n",
       " 'Aneurysm|Ruptured': '#155a5d',\n",
       " 'Aortic_Rupture': '#183f47',\n",
       " 'Aortic_Aneurysm': '#918d5a',\n",
       " 'Aortic_Aneurysm|Abdominal': '#9368ae',\n",
       " 'Aortic_Aneurysm|Thoracic': '#ac4d73',\n",
       " 'Endoleak': '#3c46a0',\n",
       " 'Iliac_Aneurysm': '#fea57d',\n",
       " 'Intracranial_Aneurysm': '#79f13c',\n",
       " 'Microaneurysm': '#9bd923',\n",
       " 'Angiodysplasia': '#da2dee',\n",
       " 'Gastric_Antral_Vascular_Ectasia': '#0c6b44',\n",
       " 'Angiomatosis': '#d4c063',\n",
       " 'Angiomatosis|Bacillary': '#22b297',\n",
       " 'Klippel~Trenaunay~Weber_Syndrome': '#e39789',\n",
       " 'Sturge~Weber_Syndrome': '#3263fd',\n",
       " 'von_Hippel~Lindau_Disease': '#f04c74',\n",
       " 'Angioedema': '#24598b',\n",
       " 'Angioedemas|Hereditary': '#f94aff',\n",
       " 'Hereditary_Angioedema_Type_III': '#172815',\n",
       " 'Hereditary_Angioedema_Types_I_and_II': '#ae0fdb',\n",
       " 'Aortic_Diseases': '#47b3fe',\n",
       " 'Aortic_Arch_Syndromes': '#cc3b6c',\n",
       " 'Takayasu_Arteritis': '#e9e5d2',\n",
       " 'Aortitis': '#8b51b0',\n",
       " 'Leriche_Syndrome': '#bbba44',\n",
       " 'Arterial_Occlusive_Diseases': '#6b6a47',\n",
       " 'Arteriosclerosis': '#2f9557',\n",
       " 'Arteriolosclerosis': '#782d2b',\n",
       " 'Arteriosclerosis_Obliterans': '#86031e',\n",
       " 'Atherosclerosis': '#c2ba28',\n",
       " 'Peripheral_Arterial_Disease': '#1064e8',\n",
       " 'Intracranial_Arteriosclerosis': '#112fa3',\n",
       " 'Dementia|Vascular': '#4cc03d',\n",
       " 'Intermittent_Claudication': '#02e715',\n",
       " 'Carotid_Stenosis': '#10092f',\n",
       " 'Fibromuscular_Dysplasia': '#d2c847',\n",
       " 'Malignant_Atrophic_Papulosis': '#f8478e',\n",
       " 'Mesenteric_Vascular_Occlusion': '#3e512d',\n",
       " 'Moyamoya_Disease': '#9d0d4d',\n",
       " 'Renal_Artery_Obstruction': '#128b1c',\n",
       " 'Retinal_Artery_Occlusion': '#122476',\n",
       " 'Susac_Syndrome': '#a31342',\n",
       " 'Stenosis|Pulmonary_Artery': '#18880b',\n",
       " 'Thromboangiitis_Obliterans': '#0333eb',\n",
       " 'Capillary_Leak_Syndrome': '#d19142',\n",
       " 'Cerebrovascular_Disorders': '#4c63f6',\n",
       " 'Basal_Ganglia_Cerebrovascular_Disease': '#b7e9b1',\n",
       " 'Basal_Ganglia_Hemorrhage': '#f7a08d',\n",
       " 'Putaminal_Hemorrhage': '#a80067',\n",
       " 'Brain_Ischemia': '#907300',\n",
       " 'Brain_Infarction': '#cfe320',\n",
       " 'Brain_Stem_Infarctions': '#ea595c',\n",
       " 'Lateral_Medullary_Syndrome': '#dee730',\n",
       " 'Cerebral_Infarction': '#977b1e',\n",
       " 'Dementia|Multi~Infarct': '#8828a4',\n",
       " 'Infarction|Anterior_Cerebral_Artery': '#bf7b3c',\n",
       " 'Infarction|Middle_Cerebral_Artery': '#770080',\n",
       " 'Infarction|Posterior_Cerebral_Artery': '#92dce8',\n",
       " 'Hypoxia~Ischemia|Brain': '#2bdf4e',\n",
       " 'Ischemic_Attack|Transient': '#1d4b68',\n",
       " 'Vertebrobasilar_Insufficiency': '#1928fa',\n",
       " 'Subclavian_Steal_Syndrome': '#f2132d',\n",
       " 'Carotid_Artery_Diseases': '#a53e36',\n",
       " 'Carotid_Artery_Injuries': '#0e5658',\n",
       " 'Carotid_Artery_Thrombosis': '#b08b85',\n",
       " 'Cerebral_Small_Vessel_Diseases': '#86c3d6',\n",
       " 'CADASIL': '#68c339',\n",
       " 'Cerebral_Amyloid_Angiopathy|Familial': '#56a7ea',\n",
       " 'Fabry_Disease': '#6883c1',\n",
       " 'MELAS_Syndrome': '#6daed4',\n",
       " 'Microscopic_Polyangiitis': '#9beb58',\n",
       " 'Stroke|Lacunar': '#84a504',\n",
       " 'Cerebrovascular_Trauma': '#2087ae',\n",
       " 'Subarachnoid_Hemorrhage|Traumatic': '#864695',\n",
       " 'Intracranial_Arterial_Diseases': '#fb658a',\n",
       " 'Cerebral_Arterial_Diseases': '#c52ccd',\n",
       " 'Cerebral_Amyloid_Angiopathy': '#962e08',\n",
       " 'Intracranial_Embolism_and_Thrombosis': '#7d2f73',\n",
       " 'Intracranial_Embolism': '#e78157',\n",
       " 'Intracranial_Thrombosis': '#cf4484',\n",
       " 'Sinus_Thrombosis|Intracranial': '#e0feca',\n",
       " 'Cavernous_Sinus_Thrombosis': '#11b99d',\n",
       " 'Lateral_Sinus_Thrombosis': '#5d70f6',\n",
       " 'Sagittal_Sinus_Thrombosis': '#97e40b',\n",
       " 'Intracranial_Hemorrhages': '#f6eec7',\n",
       " 'Cerebral_Hemorrhage': '#5329e7',\n",
       " 'Cerebral_Hemorrhage|Traumatic': '#dc9d70',\n",
       " 'Cerebral_Intraventricular_Hemorrhage': '#9a3fbd',\n",
       " 'Intracranial_Hemorrhage|Hypertensive': '#237fed',\n",
       " 'Intracranial_Hemorrhage|Traumatic': '#b2ad1e',\n",
       " 'Brain_Hemorrhage|Traumatic': '#7dcf1d',\n",
       " 'Brain_Stem_Hemorrhage|Traumatic': '#dd2cf1',\n",
       " 'Hematoma|Epidural|Cranial': '#374385',\n",
       " 'Hematoma|Subdural': '#4b0a9c',\n",
       " 'Hematoma|Subdural|Acute': '#c928ab',\n",
       " 'Hematoma|Subdural|Chronic': '#cc45de',\n",
       " 'Hematoma|Subdural|Intracranial': '#05cb09',\n",
       " 'Pituitary_Apoplexy': '#faa358',\n",
       " 'Subarachnoid_Hemorrhage': '#19ae34',\n",
       " 'Leukomalacia|Periventricular': '#f9a916',\n",
       " 'Sneddon_Syndrome': '#ed19b6',\n",
       " 'Stroke': '#d6f916',\n",
       " 'Vascular_Headaches': '#e254d3',\n",
       " 'Vasculitis|Central_Nervous_System': '#fbf463',\n",
       " 'AIDS_Arteritis|Central_Nervous_System': '#7c14b1',\n",
       " 'Giant_Cell_Arteritis': '#de5b73',\n",
       " 'Lupus_Vasculitis|Central_Nervous_System': '#8fa6c2',\n",
       " 'Vasospasm|Intracranial': '#80f035',\n",
       " 'Colitis|Ischemic': '#285996',\n",
       " 'Compartment_Syndromes': '#5a6820',\n",
       " 'Anterior_Compartment_Syndrome': '#19442d',\n",
       " 'Intra~Abdominal_Hypertension': '#e287b3',\n",
       " 'Ischemic_Contracture': '#81b5ce',\n",
       " 'Diabetic_Angiopathies': '#a9a05f',\n",
       " 'Diabetic_Foot': '#50e6ef',\n",
       " 'Diabetic_Retinopathy': '#9cab59',\n",
       " 'Embolism_and_Thrombosis': '#b6720e',\n",
       " 'Embolism': '#0404ea',\n",
       " 'Embolism|Air': '#771367',\n",
       " 'Embolism|Fat': '#122286',\n",
       " 'Embolism|Cholesterol': '#1aec7a',\n",
       " 'Blue_Toe_Syndrome': '#2e474f',\n",
       " 'Pulmonary_Embolism': '#b51a06',\n",
       " 'Pulmonary_Infarction': '#369bfb',\n",
       " 'Thromboembolism': '#66f81b',\n",
       " 'Embolism|Paradoxical': '#d68ff9',\n",
       " 'Venous_Thromboembolism': '#d02612',\n",
       " 'Thrombosis': '#1820c9',\n",
       " 'Venous_Thrombosis': '#90fb8e',\n",
       " 'Budd~Chiari_Syndrome': '#25cc61',\n",
       " 'Postthrombotic_Syndrome': '#29e58f',\n",
       " 'Retinal_Vein_Occlusion': '#a6797d',\n",
       " 'Thrombophlebitis': '#cea93a',\n",
       " 'Lemierre_Syndrome': '#4f8723',\n",
       " 'Upper_Extremity_Deep_Vein_Thrombosis': '#b32c37',\n",
       " 'Hand~Arm_Vibration_Syndrome': '#616549',\n",
       " 'Hemorrhoids': '#e22d54',\n",
       " 'Hemostatic_Disorders': '#90e8d7',\n",
       " 'Cryoglobulinemia': '#25d6ab',\n",
       " 'Ehlers~Danlos_Syndrome': '#070bc3',\n",
       " 'Hemangioma|Cavernous': '#168e77',\n",
       " 'Multiple_Myeloma': '#c067f4',\n",
       " 'Pseudoxanthoma_Elasticum': '#9b5789',\n",
       " 'Purpura|Hyperglobulinemic': '#0c3cee',\n",
       " 'Scurvy': '#6159e8',\n",
       " 'Shwartzman_Phenomenon': '#569732',\n",
       " 'Telangiectasia|Hereditary_Hemorrhagic': '#ce15d6',\n",
       " 'Waldenstrom_Macroglobulinemia': '#b4da23',\n",
       " 'Hepatic_Veno~Occlusive_Disease': '#596bbc',\n",
       " 'Hyperemia': '#bedf5b',\n",
       " 'Hypertension': '#40bd27',\n",
       " 'Essential_Hypertension': '#aca5d3',\n",
       " 'Hypertension|Malignant': '#0c84d3',\n",
       " 'Hypertension|Pregnancy~Induced': '#5bf46a',\n",
       " 'Hypertension|Renal': '#de3bcc',\n",
       " 'Hypertension|Renovascular': '#1c5bbb',\n",
       " 'Hypertensive_Retinopathy': '#b3a508',\n",
       " 'Masked_Hypertension': '#d4399e',\n",
       " 'White_Coat_Hypertension': '#4be6b2',\n",
       " 'Hypotension': '#cec9eb',\n",
       " 'Hypotension|Orthostatic': '#6b7c46',\n",
       " 'Post~Exercise_Hypotension': '#01de0e',\n",
       " 'Shy~Drager_Syndrome': '#381327',\n",
       " 'Mesenteric_Ischemia': '#a4e857',\n",
       " 'No~Reflow_Phenomenon': '#f1e1d8',\n",
       " 'Optic_Neuropathy|Ischemic': '#a24457',\n",
       " 'Peliosis_Hepatis': '#77ce03',\n",
       " 'Peripheral_Vascular_Diseases': '#f1e511',\n",
       " 'Erythromelalgia': '#a4fd2c',\n",
       " 'Livedo_Reticularis': '#3ec6bf',\n",
       " 'Phlebitis': '#8fe57b',\n",
       " 'Postphlebitic_Syndrome': '#c85e38',\n",
       " 'Raynaud_Disease': '#728e6a',\n",
       " 'CREST_Syndrome': '#311a96',\n",
       " 'Prehypertension': '#fdea36',\n",
       " 'Pulmonary_Veno~Occlusive_Disease': '#794a54',\n",
       " 'Reperfusion_Injury': '#7f2039',\n",
       " 'Primary_Graft_Dysfunction': '#f99b36',\n",
       " 'Spinal_Cord_Vascular_Diseases': '#2fca24',\n",
       " 'Spinal_Cord_Ischemia': '#cd8f46',\n",
       " 'Anterior_Spinal_Artery_Syndrome': '#38716f',\n",
       " 'Splenic_Infarction': '#160ce6',\n",
       " 'Stenosis|Pulmonary_Vein': '#e9bf3b',\n",
       " 'Superior_Vena_Cava_Syndrome': '#3cc5c6',\n",
       " 'Telangiectasis': '#cf7192',\n",
       " 'Ataxia_Telangiectasia': '#f0378f',\n",
       " 'Retinal_Telangiectasis': '#0da2d8',\n",
       " 'Thoracic_Outlet_Syndrome': '#e6feb8',\n",
       " 'Cervical_Rib_Syndrome': '#dc9305',\n",
       " 'Varicocele': '#0ee6c3',\n",
       " 'Varicose_Veins': '#fe2dad',\n",
       " 'Varicose_Ulcer': '#895a13',\n",
       " 'Vascular_Neoplasms': '#182fff',\n",
       " 'Vascular_System_Injuries': '#8cef93',\n",
       " 'Vasculitis': '#226906',\n",
       " 'Arteritis': '#5639ba',\n",
       " 'Endarteritis': '#196dbe',\n",
       " 'Polyarteritis_Nodosa': '#4f7240',\n",
       " 'Behcet_Syndrome': '#dcc880',\n",
       " 'Cogan_Syndrome': '#e3f041',\n",
       " 'Mucocutaneous_Lymph_Node_Syndrome': '#7d38bb',\n",
       " 'Purpura|Schoenlein~Henoch': '#997634',\n",
       " 'Retinal_Vasculitis': '#5eb916',\n",
       " 'Systemic_Vasculitis': '#161d88',\n",
       " 'Anti~Neutrophil_Cytoplasmic_Antibody~Associated_Vasculitis': '#52e801',\n",
       " 'Churg~Strauss_Syndrome': '#ea2bc6',\n",
       " 'Granulomatosis_with_Polyangiitis': '#844c1d',\n",
       " 'Rheumatoid_Vasculitis': '#bde31d',\n",
       " 'Vasculitis|Leukocytoclastic|Cutaneous': '#da36fd',\n",
       " 'Vasoplegia': '#1b5e27',\n",
       " 'Venous_Insufficiency': '#c1e1a2'}"
      ]
     },
     "execution_count": 53,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "Colors"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 54,
   "metadata": {},
   "outputs": [],
   "source": [
    "with open(\"data/color.json\",'w') as fw:\n",
    "    json.dump(Colors,fw)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.6.4"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 2
}