From a155b8cd57c7bec9677275556a1f9a0713f8232f Mon Sep 17 00:00:00 2001
From: dkazanc <dkazanc@hotmail.com>
Date: Mon, 2 Sep 2024 11:37:00 +0100
Subject: [PATCH] moving to github ci again

---
 .../httomo_backends_pypi_publish.yml          | 48 +++++++++----------
 pyproject.toml                                | 15 +++++-
 2 files changed, 35 insertions(+), 28 deletions(-)

diff --git a/.github/workflows/httomo_backends_pypi_publish.yml b/.github/workflows/httomo_backends_pypi_publish.yml
index 75310a1..7b65d7b 100644
--- a/.github/workflows/httomo_backends_pypi_publish.yml
+++ b/.github/workflows/httomo_backends_pypi_publish.yml
@@ -1,4 +1,4 @@
-name: Upload Python Package to PyPI when a Release is Created
+name: Upload Package to PyPI when Release is Created
 
 on:
   push:
@@ -9,39 +9,35 @@ on:
       - main
 
 jobs:
-  iris-gpu-pypi-publish:
-    runs-on: iris-gpu
-    container:
-      image: nvidia/cuda:11.6.2-devel-ubi8
-      env:
-        NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }}
-
-    defaults:
-      run:
-        shell: bash -l {0}
-
+  pypi-publish:
+    name: Publish release to PyPI
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/httomo-backends
+    permissions:
+      id-token: write
     steps:
-      - name: Checkout repository code
-        uses: actions/checkout@v4
-
-      - name: Create conda environment
-        uses: mamba-org/setup-micromamba@v1
+      - uses: actions/checkout@v4
+      - name: Set up Python
+        uses: actions/setup-python@v4
         with:
-          environment-file: conda/environment.yml
-          environment-name: httomo-backends
-          post-cleanup: 'all'
-          init-shell: bash
-
+          python-version: "3.10"
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
           pip install setuptools wheel          
-          micromamba list
+          $CONDA/bin/conda install conda-forge::tomopy
+          $CONDA/bin/conda install httomo::httomolib
+          $CONDA/bin/conda install httomo::httomolibgpu
+          $CONDA/bin/conda install conda-forge::pyyaml
+          $CONDA/bin/conda list
       - name: Generate yaml templates
         run: |
-          python ./httomo_backends/scripts/yaml_templates_generator.py -i ./httomo_backends/methods_database/backends/tomopy/tomopy_modules.yaml -o ./httomo_backends/yaml_templates/tomopy
-          python ./httomo_backends/scripts/yaml_unsupported_tomopy_remove.py -t ./httomo_backends/yaml_templates/tomopy -l ./httomo_backends/methods_database/backends/tomopy/tomopy.yaml
-          python ./httomo_backends/scripts/yaml_templates_generator.py -i ./httomo_backends/methods_database/backends/httomolib/httomolib_modules.yaml -o ./httomo_backends/yaml_templates/httomolib
+          $CONDA/bin/python ./httomo_backends/scripts/yaml_templates_generator.py -i ./httomo_backends/methods_database/backends/tomopy/tomopy_modules.yaml -o ./httomo_backends/yaml_templates/tomopy
+          $CONDA/bin/python ./httomo_backends/scripts/yaml_unsupported_tomopy_remove.py -t ./httomo_backends/yaml_templates/tomopy -l ./httomo_backends/methods_database/backends/tomopy/tomopy.yaml
+          $CONDA/bin/python ./httomo_backends/scripts/yaml_templates_generator.py -i ./httomo_backends/methods_database/backends/httomolib/httomolib_modules.yaml -o ./httomo_backends/yaml_templates/httomolib
+          $CONDA/bin/python ./httomo_backends/scripts/yaml_templates_generator.py -i ./httomo_backends/methods_database/backends/httomolibgpu/httomolibgpu_modules.yaml -o ./httomo_backends/yaml_templates/httomolibgpu
       - name: Build package
         run: |
           python -m pip install build   
diff --git a/pyproject.toml b/pyproject.toml
index 1102e1a..d252299 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,8 +6,6 @@ build-backend = "setuptools.build_meta"
 include-package-data = true
 packages = ["httomo_backends",
             "httomo_backends.scripts",
-            "httomo_backends.methods_database",
-            "httomo_backends.yaml_templates",
             ]
 
 [tool.setuptools.package-data]
@@ -26,6 +24,19 @@ httomo_backends = [
     "yaml_templates/tomopy/tomopy.recon.algorithm/*.yaml",
     "yaml_templates/tomopy/tomopy.recon.rotation/*.yaml",
     "yaml_templates/tomopy/tomopy.sim.project/*.yaml",   
+    "yaml_templates/httomolib/httomolib.misc.morph/*.yaml",
+    "yaml_templates/httomolib/httomolib.misc.images/*.yaml",
+    "yaml_templates/httomolib/httomolib.misc.segm/*.yaml",
+    "yaml_templates/httomolib/httomolib.prep.phase/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.misc.corr/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.misc.morph/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.misc.rescale/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.prep.alignment/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.prep.normalize/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.prep.phase/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.prep.stripe/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.recon.algorithm/*.yaml",
+    "yaml_templates/httomolibgpu/httomolibgpu.recon.rotation/*.yaml",
 ]
 
 [tool.setuptools-git-versioning]