From e99e9ec2851a0aab3e858e98e789aad29d37deb6 Mon Sep 17 00:00:00 2001 From: Daniel Mapleson Date: Fri, 29 Apr 2016 15:58:27 +0100 Subject: [PATCH] Changed the default filtering threshold level. --- src/junction_filter.hpp | 2 +- tests/Makefile.am | 3 +++ 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/src/junction_filter.hpp b/src/junction_filter.hpp index 302a5d86..d21b14e2 100644 --- a/src/junction_filter.hpp +++ b/src/junction_filter.hpp @@ -76,7 +76,7 @@ const string ST_IPOS_RULES_FILE = "selftrain_initial_pos"; const string ST_INEG_RULES_FILE = "selftrain_initial_neg"; const uint16_t DEFAULT_FILTER_THREADS = 1; const uint16_t DEFAULT_SELFTRAIN_TREES = 100; -const double DEFAULT_FILTER_THRESHOLD = 0.75; +const double DEFAULT_FILTER_THRESHOLD = 0.625; class JunctionFilter { diff --git a/tests/Makefile.am b/tests/Makefile.am index b3a42b38..d6d27253 100755 --- a/tests/Makefile.am +++ b/tests/Makefile.am @@ -32,6 +32,7 @@ check_unit_tests_SOURCES = bam_tests.cpp \ check_unit_tests_CXXFLAGS = -O0 @AM_CXXFLAGS@ @CXXFLAGS@ check_unit_tests_CPPFLAGS = -isystem $(top_srcdir)/deps/htslib-1.3 \ + -isystem $(top_srcdir)/deps/ranger-0.3.8/include \ -I$(top_srcdir)/lib/include \ -DRESOURCESDIR=\"$(top_srcdir)/tests/resources\" \ -DDATADIR=\"$(datadir)\" \ @@ -40,12 +41,14 @@ check_unit_tests_CPPFLAGS = -isystem $(top_srcdir)/deps/htslib-1.3 \ check_unit_tests_LDFLAGS = -L../lib \ -L../deps/htslib-1.3 \ + -L../deps/ranger-0.3.8 \ @AM_LDFLAGS@ \ @LDFLAGS@ check_unit_tests_LDADD = libgtest.la \ -lportcullis \ -lphts \ + -lranger \ @AM_LIBS@ clean-local: clean-local-check