diff --git a/README.Rmd b/README.Rmd index 6b80e2b..a09a9fc 100644 --- a/README.Rmd +++ b/README.Rmd @@ -25,6 +25,9 @@ knitr::opts_chunk$set( *pipedat* is a R package that provides analytical pipelines to access, load, and format a variety of data from multiple sources programatically. The goal of *pipedat* is to enhance the capacity scientists, planners and the wider public to prepare and perform complex and reproducible ecosystem-scale assessments requiring the integration of multiple spatial datasets such as cumulative effects assessments in the context of ecosystem-based management, and Marxan analyses for the establishment of individual and networks of MPAs. In its current format, *pipedat* is strictly experimental and in development. We are however hoping to further develop this initiative in the hopes of greatly enhancing the efficiency, transparency and reproducibility of large-scale environmental assessments. +WARNING: This version of the package is deprecated and kept for reproducibility purposes for the [`nceadfo`]() project, which heavily relies in the `pipedat` package. The `pipedat` package was begun in the wake of the `nceadfo` project; with `nceadfo` complete, I regrouped and thought of ways to make `pipedat` better and simpler to use. + +Since `pipedat` is actively developed and structured as part of other ongoing projects, it is likely that other partial versions like this will be created and kept as individual branches unless the projects themselves are updated to work with the latest version of the `pipedat` package. ## Installation diff --git a/README.md b/README.md index 88cbcdc..68278c3 100644 --- a/README.md +++ b/README.md @@ -25,6 +25,18 @@ hoping to further develop this initiative in the hopes of greatly enhancing the efficiency, transparency and reproducibility of large-scale environmental assessments. +WARNING: This version of the package is deprecated and kept for +reproducibility purposes for the [`nceadfo`]() project, which heavily +relies in the `pipedat` package. The `pipedat` package was begun in the +wake of the `nceadfo` project; with `nceadfo` complete, I regrouped and +thought of ways to make `pipedat` better and simpler to use. + +Since `pipedat` is actively developed and structured as part of other +ongoing projects, it is likely that other partial versions like this +will be created and kept as individual branches unless the projects +themselves are updated to work with the latest version of the `pipedat` +package. + ## Installation The easiest way to install `pipedat` is to use @@ -54,37 +66,32 @@ in folders ‘data/data-raw/’ and `data/data-format`, respectively. ## List of pipelines - #> Registered S3 methods overwritten by 'stars': - #> method from - #> st_bbox.SpatRaster sf - #> st_crs.SpatRaster sf - | Pipeline ID | Name | Description | Source | |:------------|:----------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | f635934a | Federal Marine Bioregions | The spatial planning framework for Canada’s national network of Marine Protected Areas (MPAs) is comprised of 13 ecologically defined bioregions that cover Canada’s oceans and the Great Lakes. | Fisheries and Oceans Canada (2009); Fisheries and Oceans Canada (2010); Government of Canada (2011); Fisheries and Oceans Canada (2021a) | | 750b39f9 | Maritimes cumulative effects assessment study area grid | Gridded study area used jointly with N. Kelly and G. Murphy for the Maritimes region cumulative effects assessment | Kelly and Murphy (2021) | | f2109e69 | Commercial fisheries logbooks | A compilation of landing data from Zonal Interchange File Format (ZIFF) data between 2000 and 2020 | Fisheries and Oceans Canada (2021b) | -| 35608fef | CanCoast - Coastal Materials Version 2.0 | CanCoast 2.0: data and indices to describe the sensitivity of Canada’s marine coasts to changing climate | Manson Couture, et al. (2019) | +| 35608fef | CanCoast - Coastal Materials Version 2.0 | CanCoast 2.0: data and indices to describe the sensitivity of Canada’s marine coasts to changing climate | Manson Couture et al. (2019) | | 06230ea3 | Canadian National Marine Seismic Data Repository | The Geological Survey of Canada (Atlantic and Pacific) has collected marine survey field records on marine expeditions for over 50 years. This release makes available the results of an ongoing effort to scan and convert our inventory of analog marine survey field records (seismic, sidescan and sounder) to digital format. | Geological Survey of Canada (2021) | | 804db12e | Federal Contaminated Sites Inventory | The Federal Contaminated Sites Inventory includes information on all known federal contaminated sites under the custodianship of departments, agencies and consolidated Crown corporations as well as those that are being or have been investigated to determine whether they have contamination arising from past use that could pose a risk to human health or the environment. The inventory also includes non-federal contaminated sites for which the Government of Canada has accepted some or all financial responsibility. It does not include sites where contamination has been caused by, and which are under the control of, enterprise Crown corporations, private individuals, firms or other levels of government. | Treasury Board of Canada Secretariat (2021) | | 4b72884d | Active and Inactive Disposal at Sea Sites | The Active and Inactive Disposal at Sea Sites in Canadian Waters dataset provides spatial and related information of at-sea disposal sites approved for use in Canada in the last ten years and that remain open for consideration for additional use. | Environment and Climate Change Canada (2021) | | 68609420 | Atlantic Shoreline Classification | The Atlantic dataset is part of Environment and Climate Change Canada�s Shoreline Classification and Pre-Spill database. Shoreline classification data has been developed for use by the Environmental Emergencies Program of Environment and Climate Change Canada for environmental protection purposes. Marine and estuarine shorelines are classified according to the character (substrate and form) of the upper intertidal (foreshore) or upper swash zone (Sergy, 2008). | Sergy (2008) | -| 084860fd | WoRMS North-West Atlantic species checklist | CaRMS and WoRMS species list for the North-West Atlantic area of interest | Nozères and Kennedy (2021); Horton Kroh, et al. (2021) | -| 8509eeb1 | Nighttime Ligths | A new consistently processed time series of annual global VIIRS nighttime lights has been produced from monthly cloud-free average radiance grids spanning 2012 to 2020. The new methodology is a modification of the original method based on nightly data (Annual VNL V1). Visite for more information. | Elvidge Zhizhin, et al. (2021) | +| 084860fd | WoRMS North-West Atlantic species checklist | CaRMS and WoRMS species list for the North-West Atlantic area of interest | Nozères and Kennedy (2021); Horton Kroh et al. (2021) | +| 8509eeb1 | Nighttime Ligths | A new consistently processed time series of annual global VIIRS nighttime lights has been produced from monthly cloud-free average radiance grids spanning 2012 to 2020. The new methodology is a modification of the original method based on nightly data (Annual VNL V1). Visite for more information. | Elvidge Zhizhin et al. (2021) | | 8449dee0 | AIS global shipping data | Monthly shipping rasters at 0.1 degree resolution including the number of vessels and total hours of vessel presence for all vessels classified by Global Fishing Watch as one of the following: ‘cargo’, ‘specialized\_reefer’, ‘tanker’, ‘bunker’, ‘cargo\_or\_tanker’, ‘cargo\_or\_reefer’, ‘bunker\_or\_tanker’, ‘container\_reefer’, ‘passenger’. There are two versions of the data available, one based only on actual AIS positions and one where vessel location is interpolated to a regular interval of five minutes. | Watch (2022) | | c676dc2b | Census cartographic boundary files 2016 | Cartographic boundary files for dissemination areas of the 2016 Canadian census | Canada (2016a); Canada (2017) | | b9024b04 | Census cartographic boundary files 2021 | Boundary files for dissemination areas of the 2021 Canadian census | Canada (2022c); Canada (2022d) | | d147406d | Census population 2016 | Population and dwelling counts, for dissemination areas, 2016 Census | Canada (2016b) | | d96dec16 | Census population 2021 | Population and dwelling counts: Canada, provinces and territories, census subdivisions and dissemination areas | Canada (2022e) | -| d87b7f5f | Sea surface temperature anomalies | Surface-water temperature anomalies from the Department of Fisheries and Oceans (DFO) Atlantic Zone Monitoring Program (AZMP) | Galbraith Chassé, et al. (2018) | -| 1b4dba19 | Sea surface temperature anomalies climatology | Surface-water temperature anomalies climatology data from the Department of Fisheries and Oceans� (DFO) Atlantic Zone Monitoring Program (AZMP) | Galbraith Chassé, et al. (2018) | -| 4f84f0e3 | Global cumulative human impacts assessments in 2008 and 2013 | Data from the assessments of global marine cumulative human impacts in 2008 and 2013 | Halpern Walbridge, et al. (2008); Halpern Frazier, et al. (2015a); Halpern Frazier, et al. (2015b) | +| d87b7f5f | Sea surface temperature anomalies | Surface-water temperature anomalies from the Department of Fisheries and Oceans (DFO) Atlantic Zone Monitoring Program (AZMP) | Galbraith Chassé et al. (2018) | +| 1b4dba19 | Sea surface temperature anomalies climatology | Surface-water temperature anomalies climatology data from the Department of Fisheries and Oceans� (DFO) Atlantic Zone Monitoring Program (AZMP) | Galbraith Chassé et al. (2018) | +| 4f84f0e3 | Global cumulative human impacts assessments in 2008 and 2013 | Data from the assessments of global marine cumulative human impacts in 2008 and 2013 | Halpern Walbridge et al. (2008); Halpern Frazier et al. (2015a); Halpern Frazier et al. (2015b) | | 3d1bfb8e | Marine mammals | Cartographic data: a mariner’s guide to whales in the Northwest Atlantic, 2nd edition | Le WWF-Canada et le Réseau d’observation de mammifères marins (2021a); Le WWF-Canada et le Réseau d’observation de mammifères marins (2021b); Le WWF-Canada et le Réseau d’observation de mammifères marins (2021c) | -| 71944efd | Monthly temperature climatology | Monthly mean temperature from Bedford Institute of Oceanography North Atlantic Model (BNAM) results averaged over 1990 to 2015 period | Wang Lu, et al. (2018a); Wang Lu, et al. (2018b) | -| 0d61380a | Monthly salinity climatology | Monthly mean salinity from Bedford Institute of Oceanography North Atlantic Model (BNAM) results averaged over 1990 to 2015 period | Wang Lu, et al. (2018a); Wang Lu, et al. (2018c) | -| 906f1155 | Monthly currents climatology | Monthly mean salinity from Bedford Institute of Oceanography North Atlantic Model (BNAM) results averaged over 1990 to 2015 period | Wang Lu, et al. (2018a); Wang Lu, et al. (2018d) | +| 71944efd | Monthly temperature climatology | Monthly mean temperature from Bedford Institute of Oceanography North Atlantic Model (BNAM) results averaged over 1990 to 2015 period | Wang Lu et al. (2018a); Wang Lu et al. (2018b) | +| 0d61380a | Monthly salinity climatology | Monthly mean salinity from Bedford Institute of Oceanography North Atlantic Model (BNAM) results averaged over 1990 to 2015 period | Wang Lu et al. (2018a); Wang Lu et al. (2018c) | +| 906f1155 | Monthly currents climatology | Monthly mean salinity from Bedford Institute of Oceanography North Atlantic Model (BNAM) results averaged over 1990 to 2015 period | Wang Lu et al. (2018a); Wang Lu et al. (2018d) | | e775900b | The GEBCO\_2021 Grid | The GEBCO\_2021 Grid was published in July 2021 and is a global terrain model for ocean and land, providing elevation data, in meters, on a 15 arc-second interval grid | Group (2021) | -| 7c8c4da1 | Invasive species distribution models | Species distribution models and occurrence data for marine invasive species hotspot identification | Lyons Lowen, et al. (2020a); Lyons Lowen, et al. (2020b) | +| 7c8c4da1 | Invasive species distribution models | Species distribution models and occurrence data for marine invasive species hotspot identification | Lyons Lowen et al. (2020a); Lyons Lowen et al. (2020b) | | 2aafec74 | DFO Research Vessel Survey 4VSW | The Fisheries and Oceans Canada (DFO) ecosystem surveys consist of research vessel survey data collected to monitor the distribution and abundance of fish and invertebrates throughout the Scotian Shelf, Bay of Fundy and Georges Bank. The 4VSW survey is focused on the eastern half of the Scotian Shelf, and occurs primarily in March, but sets in both February, and April are also present in the data | Fisheries and Oceans Canada (2020a) | | 90e90110 | DFO Research Vessel Survey Fall | The Fisheries and Oceans Canada (DFO) ecosystem surveys consist of research vessel survey data collected to monitor the distribution and abundance of fish and invertebrates throughout the Scotian Shelf, Bay of Fundy and Georges Bank. The fall survey occurs primarily in October and November, but sets from September and December are also present in the data | Fisheries and Oceans Canada (2020b) | | 21f8a758 | DFO Research Vessel Survey Spring | The Fisheries and Oceans Canada (DFO) ecosystem surveys consist of research vessel survey data collected to monitor the distribution and abundance of fish and invertebrates throughout the Scotian Shelf, Bay of Fundy and Georges Bank. The Spring survey occurs in January, February, March and April, and focus on Georges Bank | Fisheries and Oceans Canada (2020c) | @@ -94,23 +101,23 @@ in folders ‘data/data-raw/’ and `data/data-format`, respectively. | 70efb2b0 | Native Land Digital | Native Land is an app to help map Indigenous territories, treaties, and languages. The map provided does not represent or intend to represent official or legal boundaries of any Indigenous nations. To learn about definitive boundaries, contact the nations in question. Also, the map is not perfect – it is a work in progress with tons of contributions from the community. Please send fixes to if you find errors. | Digital (2022) | | ce594316 | First Nations Location | The First Nations geographic location dataset contains the geographic location of First Nations (groups and subgroups) in Canada as points as well as basic attributes data. | Canada (2022a) | | 621e9a76 | Inuit Communities Location | The Inuit Communities geographic location dataset contains the geographic location of Inuit Communities in Canada as points, as well as data attributes specific to each community. | Crown-Indigenous Relations and Northern Affairs Canada (2020) | -| e2349037 | Terrestrial human footprint | Change in terrestrial human footprint drives continued loss of intact ecosystems | Venter Sanderson, et al. (2016a); Venter Sanderson, et al. (2016b); Williams Venter, et al. (2020a); Williams Venter, et al. (2020b) | -| 103a233e | Terrestrial human footprint | Data from: Global terrestrial Human Footprint maps for 1993 and 2009 | Venter Sanderson, et al. (2016a); Venter Sanderson, et al. (2016b) | +| e2349037 | Terrestrial human footprint | Change in terrestrial human footprint drives continued loss of intact ecosystems | Venter Sanderson et al. (2016a); Venter Sanderson et al. (2016b); Williams Venter et al. (2020a); Williams Venter et al. (2020b) | +| 103a233e | Terrestrial human footprint | Data from: Global terrestrial Human Footprint maps for 1993 and 2009 | Venter Sanderson et al. (2016a); Venter Sanderson et al. (2016b) | | 786f7481 | Aboriginal Lands of Canada Legislative Boundaries | The Aboriginal Lands of Canada Legislative Boundaries web service includes legislative boundaries of Indian Reserves, Land Claim Settlement Lands (lands created under Comprehensive Land Claims Process that do not or will not have Indian Reserve status under the Indian Act) and Indian Lands. | Canada (2022b) | | 7a44eaf0 | Tribal Councils Location | The tribal council geographic location dataset contains the geographic location of all tribal councils in Canada as points as well as basic attributes data. Each tribal council point represents its address as it is registered in Indigenous and Northern Affairs Canada (INAC) Indian Government Support System (IGSS). | Crown-Indigenous Relations and Northern Affairs Canada (2019a) | | 3fa4aeb6 | Inuit Regions (Inuit Nunangat) | The Inuit Regions, also known as the Inuit Nunangat, dataset contains the geographical boundaries of the 4 Inuit Regions in Canada: Inuvialuit, Nunavut, Nunavik and Nunatsiavut. | Crown-Indigenous Relations and Northern Affairs Canada (2019b) | | fdd796d7 | Summer Groundfish Interpolated Results Scotian Shelf | Temperature data from the summer groundfish survey of Fisheries and Oceans Canada on the Scotian Shelf | Fisheries and Oceans Canada (2022b) | | e328da3a | Community Well-Being Index | The Community Well-Being (CWB) Index is a method of assessing socio-economic well-being in Canadian communities. Various indicators of socio-economic well-being, including education, labour force activity, income and housing, are derived from Statistics Canada’s Census of Population and combined to give each community a well-being ‘score’. These scores are used to compare well-being across First Nations and Inuit communities with well-being in other Canadian communities. | Crown-Indigenous Relations and Northern Affairs Canada (2022) | | b39ddb9f | River discharge in the St. Lawrence | Monthly water discharge for the 78 main rivers in the Estuary and Gulf of St. Lawrence between 1948 and 2021 | Chassé (2022) | -| 091d10ec | Mercury concentrations in the Canadian Arctic marine ecosystem | This dataset contains 2005 concentrations of total mercury (THg), gaseous elemental mercury (GEM), methylated mercury, dimethyl mercury (DMHg) in the water column of the Canadian Arctic. | Kirk (2018); Kirk St. Louis, et al. (2008) | -| 0bf96a89 | Perfluoroalkyl substances (PFAS) in the Canadian Arctic marine ecosystem | This dataset contains concentrations of perfluoroalkyl substances (PFAS) in seawater sampled in various locations in the Arctic ranging from 2005-2008. | De Silva and Kirk (2018); Benskin Muir, et al. (2012) | -| caa1fb75 | Concentrations of organophosphate esters (OPEs) and polybrominated diphenyl ethers (PBDEs) in the North Atlantic Ocean | This dataset contains the ambient dissolved concentrations of organophosphate esters (OPEs) and polybrominated diphenyl ethers (PBDEs) in North Atlantic Ocean (Greenland Sea) as well as a summary of the passive polyethylene samplers (PEs) deployed. | De Silva (2018); McDonough De Silva, et al. (2018) | +| 091d10ec | Mercury concentrations in the Canadian Arctic marine ecosystem | This dataset contains 2005 concentrations of total mercury (THg), gaseous elemental mercury (GEM), methylated mercury, dimethyl mercury (DMHg) in the water column of the Canadian Arctic. | Kirk (2018); Kirk St. Louis et al. (2008) | +| 0bf96a89 | Perfluoroalkyl substances (PFAS) in the Canadian Arctic marine ecosystem | This dataset contains concentrations of perfluoroalkyl substances (PFAS) in seawater sampled in various locations in the Arctic ranging from 2005-2008. | De Silva and Kirk (2018); Benskin Muir et al. (2012) | +| caa1fb75 | Concentrations of organophosphate esters (OPEs) and polybrominated diphenyl ethers (PBDEs) in the North Atlantic Ocean | This dataset contains the ambient dissolved concentrations of organophosphate esters (OPEs) and polybrominated diphenyl ethers (PBDEs) in North Atlantic Ocean (Greenland Sea) as well as a summary of the passive polyethylene samplers (PEs) deployed. | De Silva (2018); McDonough De Silva et al. (2018) | | d770f210 | Carte écoforestière originale et résultats d’inventaire | La carte écoforestière originale et résultats d’inventaire constituent un regroupement de données écoforestières comprenant la carte écoforestière originale et de nombreuses autres tables fournissant de l’information se rattachant directement aux peuplements forestiers. L’information contenue dans ce jeu de données correspond au portrait de la forêt jusqu’à l’année de la photographie aérienne | Ministère de la Forêt de la Faune et des Parcs (2022) | | b5433840 | Geolocated placenames in Canada | The collection of geolocated placenames in Canada represents a consistent and comprehensive distribution of named places across Canada. Named places include large and small cities, villages, First Nations Communities, Small Hamlets etc. | Innovation (2020) | -| 9d64101c | Sea surface temperature anomalies | Surface-water temperature anomalies from the Department of Fisheries and Oceans (DFO) Atlantic Zone Monitoring Program (AZMP) between 2000 and 2022 | Galbraith Chassé, et al. (2021) | +| 9d64101c | Sea surface temperature anomalies | Surface-water temperature anomalies from the Department of Fisheries and Oceans (DFO) Atlantic Zone Monitoring Program (AZMP) between 2000 and 2022 | Galbraith Chassé et al. (2021) | | 004b3c51 | Canadian Exclusive Economic Zone | Canadian Exclusive Economic Zone | Institute (2019) | -| a56e753b | Timeline of COVID-19 in Canada | The Timeline of COVID-19 in Canada (CovidTimelineCanada) is intended to be the definitive source for data regarding the COVID-19 pandemic in Canada. In addition to making available the ready-to-use datasets, this repository also acts as a hub for collaboration on expanding and improving the availability and quality of COVID-19 data in Canada. This repository is maintained by the COVID-19 Canada Open Data Working Group and is one component of the What Happened? COVID-19 in Canada project. | Berry O’Neill, et al. (2021) | -| d8094d1b | Species interations catalog | Catalog of empirical binary species interactions from various sources | Beauchesne Desjardins-Proulx, et al. (2016) | +| a56e753b | Timeline of COVID-19 in Canada | The Timeline of COVID-19 in Canada (CovidTimelineCanada) is intended to be the definitive source for data regarding the COVID-19 pandemic in Canada. In addition to making available the ready-to-use datasets, this repository also acts as a hub for collaboration on expanding and improving the availability and quality of COVID-19 data in Canada. This repository is maintained by the COVID-19 Canada Open Data Working Group and is one component of the What Happened? COVID-19 in Canada project. | Berry O’Neill et al. (2021) | +| d8094d1b | Species interations catalog | Catalog of empirical binary species interactions from various sources | Beauchesne Desjardins-Proulx et al. (2016) | | 8b0bbc44 | Open Database of Healthcare Facilities | The Open Database of Healthcare Facilities (ODHF) contains the names, addresses and geo-coordinates of healthcare facilities across Canada. Facilities are classified by type. The current version (version 1.1) contains approximately 7,000 records compiled from open data sources, publicly available data, and data directly provided by sources for inclusion as open data. | Canada (2020a); Canada (2020b) | | c71da4d7 | Health Regions: Boundaries and Correspondence with Census Geography | The health region boundaries provided in this product are based on 2016 Census geographic units. The smallest geographic unit available has been used as the building block to define health regions. | Canada (2020c) | | d2f44fdf | National Pollutant Release Inventory | The National Pollutant Release Inventory (NPRI) is Canada’s public inventory of pollutant releases (to air, water and land), disposals and transfers for recycling. Each file contains data from 1993 to the latest reporting year. These CSV format datasets are in normalized or ‘list’ format and are optimized for pivot table analyses. | Environment and Climate Change Canada (2022) | @@ -121,17 +128,17 @@ in folders ‘data/data-raw/’ and `data/data-format`, respectively. | 5e4be996 | Census cartographic subdivision boundary files 2021 | Boundary files for subdivision areas of the 2021 Canadian census | Canada (2022i); Canada (2022c) | | 929a1773 | Census water treatment | Treatment of main source of water by households, Canada, provinces and census metropolitan areas (CMA) | Canada (2021) | | 000fd656 | Census cartographic subdivision boundary files 2016 | Boundary files for subdivision areas of the 2016 Canadian census | Canada (2017); Canada (2016c) | -| 4d4292ca | Bio-ORACLE | Bio-ORACLE is a set of GIS rasters providing geophysical, biotic and environmental data for surface and benthic marine realms. | Bosch and Fernandez (2022); Tyberghein Verbruggen, et al. (2012); Assis Tyberghein, et al. (2018) | +| 4d4292ca | Bio-ORACLE | Bio-ORACLE is a set of GIS rasters providing geophysical, biotic and environmental data for surface and benthic marine realms. | Bosch and Fernandez (2022); Tyberghein Verbruggen et al. (2012); Assis Tyberghein et al. (2018) | | 57121439 | Watershed activity index | TBD | Guijarro-Sabaniel and Kelly (2022) | -| 379900c1 | Sea bottom temperature anomalies | Bottom-water temperature anomalies from the Department of Fisheries and Oceans (DFO) Atlantic Zone Monitoring Program (AZMP) between 2000 and 2022 | Galbraith Chassé, et al. (2021) | +| 379900c1 | Sea bottom temperature anomalies | Bottom-water temperature anomalies from the Department of Fisheries and Oceans (DFO) Atlantic Zone Monitoring Program (AZMP) between 2000 and 2022 | Galbraith Chassé et al. (2021) | | a8d6e8b7 | Bottom water temperature and salinity in the Estuary and Gulf of St.Lawrence | Gridded temperature and salinity of the Estuary and Gulf of St. Lawrence bottom waters including shallow waters. Data are a result of a 3D interpolation on a 1km x 1km x bottom depth grid. They mostly come from the 2 multidisciplinary surveys but all the available CTD data sampled in August and September were used. | Fisheries and Oceans Canada (2022c) | | de3ff303 | Deep water dissolved oxygen in the Estuary and Gulf of St.Lawrence | Deep water (> 200 m) dissolved oxygen interpolated on a grid cell of 10 km x10 km in the Estuary and Gulf of St. Lawrence. Input data are from the annual August multidisciplinary survey hold in 2011 to 2020. | | | d6b6f3fa | Groundfish and shrimp annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence (CCGS Teleost 2004 - 2021) | Fisheries and Oceans Canada (DFO) conducts an annual multidisciplinary scientific survey with a bottom trawl in the Estuary and the northern Gulf of St. Lawrence since 1978. Over the years this survey has been conducted on four vessels: the MV Gadus Atlantica (1978-1994), the MV Lady Hammond (1984-1990), the CCGS Alfred Needler (1990-2005) and the CCGS Teleost (2004-2021). It is important to note that the objectives, the methods used and the identification of the species during these surveys have improved over time in response to DFO requests and mandates. The data are therefore not directly comparable between these surveys. | Fisheries and Oceans Canada (2022e) | | 5b61d05c | NAFO Division 4T groundfish research vessel trawl survey (September Survey) dataset | Tow, catch, length frequency, and biological information for fish caught during the annual September research vessel trawl surveys in the southern Gulf of St. Lawrence (NAFO Division 4T). Abundance indices and spatial distribution patterns of commercial and non-commercial groundfish. | Fisheries and Oceans Canada (2022f) | | 1386850b | Species vulnerability to environmental stressors | Evaluation of species-specific vulnerabilities to environmental stressors as a function of a series of traits such as body composition, body size and environment. | Beauchesne (2020) | -| 0b902b1e | Species trophic sensitivity | Evaluation of a species sensitivity based on its position in food chain, omnivory, apparent competition and exploitative competition | Beauchesne Cazelles, et al. (2021) | -| 08e94a14 | Eastern Canada Seabirds at Sea (ECSAS) database | Boat-based and aerial-based data from the Eastern Canada Seabirds at Sea (ECSAS) database extracted on 2023-01-19 and 2022-01-17, respectively. The data was clipped to the Scotian Shelf Bioregion and for the project on evaluating the cumulative effects of global changes on food webs of the region. | Gjerdrum Fifield, et al. (2012); Service and Environment and Climate Change Canada (2022) | -| 7a5323bb | Catalog of trophic interactions for the Scotian Shelf from the Global Biotic Interactions (GLoBI) data portal | Global Biotic Interactions (GloBI) provides open access to finding species interaction data (e.g., predator-prey, pollinator-plant, pathogen-host, parasite-host) by combining existing open datasets using open source software. | Poelen Simons, et al. (2014); Poelen Gosnell, et al. (2022) | +| 0b902b1e | Species trophic sensitivity | Evaluation of a species sensitivity based on its position in food chain, omnivory, apparent competition and exploitative competition | Beauchesne Cazelles et al. (2021) | +| 08e94a14 | Eastern Canada Seabirds at Sea (ECSAS) database | Boat-based and aerial-based data from the Eastern Canada Seabirds at Sea (ECSAS) database extracted on 2023-01-19 and 2022-01-17, respectively. The data was clipped to the Scotian Shelf Bioregion and for the project on evaluating the cumulative effects of global changes on food webs of the region. | Gjerdrum Fifield et al. (2012); Service and Environment and Climate Change Canada (2022) | +| 7a5323bb | Catalog of trophic interactions for the Scotian Shelf from the Global Biotic Interactions (GLoBI) data portal | Global Biotic Interactions (GloBI) provides open access to finding species interaction data (e.g., predator-prey, pollinator-plant, pathogen-host, parasite-host) by combining existing open datasets using open source software. | Poelen Simons et al. (2014); Poelen Gosnell et al. (2022) | ## How to contribute