From 2cdddef02edaa5c343d9b5f53ab5bb95e609abd1 Mon Sep 17 00:00:00 2001
From: Daniel Zerbino <zerbino@ebi.ac.uk>
Date: Fri, 7 Dec 2018 11:43:34 +0000
Subject: [PATCH] Add path to probable location of HTSlib and libBigWig
 directories

---
 src/Makefile | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/Makefile b/src/Makefile
index 7dd8cb8..3e74617 100644
--- a/src/Makefile
+++ b/src/Makefile
@@ -1,8 +1,9 @@
+CC=/bin/cc
 CFLAGS=-g -Wall -O3 -std=gnu99
 LIBDIR=../lib
 BINDIR=../bin
-INC=
-LIB_PATHS=-L${LIBDIR}
+INC=-I../../libBigWig -I../../htslib
+LIB_PATHS=-L${LIBDIR} -L../../libBigWig -L../../htslib
 LIBS= -lwiggletools -lBigWig -lcurl -lhts -lgsl  -lgslcblas -lz -lpthread -lm
 OPTS=-D_PBGZF_USE