diff --git a/source/functional-annotation/read_mapping.rst b/source/functional-annotation/read_mapping.rst index cf09d5a..21e3c62 100644 --- a/source/functional-annotation/read_mapping.rst +++ b/source/functional-annotation/read_mapping.rst @@ -50,7 +50,7 @@ First set up the files needed for mapping:: cd ~/mg-workshop/results/functional_annotation/mapping/$SAMPLE/ ln -s ~/mg-workshop/data/$SAMPLE/reads/1M/${SAMPLE_ID}_1M.1.fastq pair1.fastq ln -s ~/mg-workshop/data/$SAMPLE/reads/1M/${SAMPLE_ID}_1M.2.fastq pair2.fastq - ln -s ~/mg-workshop/results/assembly/$SAMPLE/${SAMPLE}_31/contigs.fa + ln -s /proj/g2014180/nobackup/metagenomics-workshop/results/assembly/$SAMPLE/${SAMPLE}_31/contigs.fa Then run the script that performs the mapping::