Error in building group config file by "cpac group feat load_preset"

[Zeigar]

Hi everyone,

After preprocessed by “cpac run”, I am trying to generate model presets in different way but always get errors. Following the online user guide, the output of “cpac group feat load_preset single_grp_avg --help” is:
Usage: run.py group feat load_preset single_grp_avg [OPTIONS] PIPELINE_DIR
Z_THRESH P_THRESH
MODEL_NAME
So, the command “cpac group feat load_preset single_grp_avg /home/user/Test/cpac/output 2.3 0.05 sgl_sub4” was executed, but it failed to access the “cpac_outputs.csv” file. Moreover, the command “cpac group feat build_models /home/user/Applications/cpac/group_config_sharp.yml” had the same error. The detailed error is as follows:

raceback (most recent call last):
  File "/code/CPAC/utils/create_fsl_flame_preset.py", line 998, in run
    keys = pd.read_csv(keys_csv)
  File "/usr/local/miniconda/lib/python3.7/site-packages/pandas/io/parsers.py", line 678, in parser_f
    return _read(filepath_or_buffer, kwds)
  File "/usr/local/miniconda/lib/python3.7/site-packages/pandas/io/parsers.py", line 440, in _read
    parser = TextFileReader(filepath_or_buffer, **kwds)
  File "/usr/local/miniconda/lib/python3.7/site-packages/pandas/io/parsers.py", line 787, in __init__
    self._make_engine(self.engine)
  File "/usr/local/miniconda/lib/python3.7/site-packages/pandas/io/parsers.py", line 1014, in _make_engine
    self._engine = CParserWrapper(self.f, **self.options)
  File "/usr/local/miniconda/lib/python3.7/site-packages/pandas/io/parsers.py", line 1708, in __init__
    self._reader = parsers.TextReader(src, **kwds)
  File "pandas/_libs/parsers.pyx", line 384, in pandas._libs.parsers.TextReader.__cinit__
  File "pandas/_libs/parsers.pyx", line 695, in pandas._libs.parsers.TextReader._setup_parser_source
FileNotFoundError: File b'/code/CPAC/resources/cpac_outputs.csv' does not exist

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/code/run.py", line 762, in <module>
    run_main()
  File "/code/run.py", line 334, in run_main
    main.main(args=sys.argv[sys.argv.index('--') + 1:])
  File "/usr/local/miniconda/lib/python3.7/site-packages/click/core.py", line 697, in main
    rv = self.invoke(ctx)
  File "/usr/local/miniconda/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/usr/local/miniconda/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/usr/local/miniconda/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  [Previous line repeated 1 more time]
  File "/usr/local/miniconda/lib/python3.7/site-packages/click/core.py", line 895, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/usr/local/miniconda/lib/python3.7/site-packages/click/core.py", line 535, in invoke
    return callback(*args, **kwargs)
  File "/code/CPAC/__main__.py", line 176, in single_grp_avg
    model_name=model_name)
  File "/code/CPAC/utils/create_fsl_flame_preset.py", line 1002, in run
    raise Exception(err)
Exception: 
[!] Could not access or read the cpac_outputs.csv resource file:
/code/CPAC/resources/cpac_outputs.csv

Error details File b'/code/CPAC/resources/cpac_outputs.csv' does not exist

Thanks a lot,
Xiaochen