-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathDESCRIPTION
34 lines (34 loc) · 1.01 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
Package: BoneCellType
Version: 0.0.1
Title: BoneCellType: Probable cell type identification through bone-associated
marker enrichment
Description: The package identifies most probable cell type of single-cell
clusters based on enrichment of cluster variable markers within database
of bone-relevant markers. Two methods are implemented in the package -
enrichment based on Fisher's exact test or enrichment based on GSEA
analysis. Plotting functions are provided.
Authors@R:
person("Kristyna", "Kupkova", email = "kristynakupkova@gmail.com",
role = c("aut", "cre"))
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews: DifferentialExpression, GeneExpression,
GeneSetEnrichment, Pathways, Software
Depends:
R (>= 2.10)
Imports:
dplyr,
ggplot2,
fgsea,
klippy
Suggests:
rmarkdown,
knitr,
viridisLite
Remotes:
rlesur/klippy
LazyData: true
License: MIT + file LICENSE
VignetteBuilder: knitr
URL: https://farber-lab.github.io/BoneCellType/