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Tag tasks .github/workflows/test.yaml #364: Commit c18d491 pushed by sminot
February 5, 2024 04:47 5m 11s main
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February 5, 2024 04:47 5m 11s
Fall back on fastq_1 from R1 in samplesheet .github/workflows/test.yaml #363: Commit a7ff2a8 pushed by sminot
February 5, 2024 04:19 4m 59s main
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February 5, 2024 04:19 4m 59s
drop any genomes which don't have gene content in bins .github/workflows/test.yaml #362: Commit 31fa8ce pushed by sminot
February 5, 2024 04:11 6m 37s main
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February 5, 2024 04:11 6m 37s
Align reads to pangenome .github/workflows/test.yaml #361: Commit 110f691 pushed by sminot
February 4, 2024 22:22 5m 8s main
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February 4, 2024 22:22 5m 8s
Fail on download errors .github/workflows/test.yaml #360: Commit 60fb313 pushed by sminot
February 4, 2024 21:33 5m 53s main
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February 4, 2024 21:33 5m 53s
Only take .fasta/.fna/.faa files .github/workflows/test.yaml #359: Commit b2e4721 pushed by sminot
February 1, 2024 17:56 7m 6s main
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February 1, 2024 17:56 7m 6s
Fetch from subfolders .github/workflows/test.yaml #358: Commit 5ba64fa pushed by sminot
February 1, 2024 17:44 5m 42s main
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February 1, 2024 17:44 5m 42s
Skip accessions that do not have data .github/workflows/test.yaml #357: Commit 1357e63 pushed by sminot
January 30, 2024 21:51 5m 25s main
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January 30, 2024 21:51 5m 25s
Check GenBank and RefSeq for data to download .github/workflows/test.yaml #356: Commit 552a1e9 pushed by sminot
January 30, 2024 21:46 5m 39s main
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January 30, 2024 21:46 5m 39s
Wrapper workflow to build a pangenome .github/workflows/test.yaml #355: Commit 23709f3 pushed by sminot
January 30, 2024 18:15 5m 41s main
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January 30, 2024 18:15 5m 41s
Skip input files which don't exist .github/workflows/test.yaml #354: Commit 4eea9f4 pushed by sminot
January 30, 2024 14:05 5m 14s main
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January 30, 2024 14:05 5m 14s
Download from newer NCBI Datasets TSV formatted manifests .github/workflows/test.yaml #353: Commit 76a3453 pushed by sminot
January 30, 2024 13:58 5m 40s main
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January 30, 2024 13:58 5m 40s
Scale the NNLS residual by the number of reads input .github/workflows/test.yaml #352: Commit aaac514 pushed by sminot
January 26, 2024 18:05 9m 55s main
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January 26, 2024 18:05 9m 55s
Analyze metagenomes using binned genes .github/workflows/test.yaml #351: Commit 3a83e00 pushed by sminot
January 25, 2024 23:23 8m 49s main
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January 25, 2024 23:23 8m 49s
Enhance outputs from bin_genes.py .github/workflows/test.yaml #350: Commit 3c9df78 pushed by sminot
January 17, 2024 20:47 8m 55s main
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January 17, 2024 20:47 8m 55s
Group genes into bins based on co-occurrence across genomes .github/workflows/test.yaml #349: Commit 03326f3 pushed by sminot
January 16, 2024 22:30 8m 55s main
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January 16, 2024 22:30 8m 55s
align_genomes: Add summary plots .github/workflows/test.yaml #348: Commit 35ff197 pushed by sminot
January 14, 2024 21:35 8m 8s main
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January 14, 2024 21:35 8m 8s
Better find input files .github/workflows/test.yaml #347: Commit feb5d0d pushed by sminot
November 14, 2023 19:35 8m 33s main
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November 14, 2023 19:35 8m 33s
select_markers - logging .github/workflows/test.yaml #346: Commit c27aa13 pushed by sminot
October 30, 2023 20:00 13m 38s main
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October 30, 2023 20:00 13m 38s