.travis.yml

sudo: required
dist: trusty
language: python
python:
  - '2.7'
  - '3.5'
  - '3.6'
install:
  - sudo apt-get update
  - wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh;
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  # Useful for debugging any issues with conda
  - conda info -a
  - conda config --add channels r
  - conda config --add channels bioconda
  # check packages install correctly
  - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION pip nose cython pysam pandas samtools biobambam star velvet ucsc-gtftogenepred salmon gffread
  - source activate test-environment
  - python setup.py install

before_script:
  - pip install coverage
script: nosetests --with-coverage --cover-package=starseqr_utils