diff --git a/paper/compile_preprint.sh b/paper/compile_preprint.sh new file mode 100644 index 0000000..a6491d2 --- /dev/null +++ b/paper/compile_preprint.sh @@ -0,0 +1,8 @@ +cat preprint.yml > preprint.md +tail -n +89 paper.md >> preprint.md +pandoc --filter pandoc-citeproc --bibliography=paper.bib \ + --variable papersize=a4paper -s preprint.md -o preprint.pdf \ + --lua-filter=/Users/kelly/.pandoc/scholarly-metadata.lua \ + --lua-filter=/Users/kelly/.pandoc/author-info-blocks.lua \ + --pdf-engine=xelatex -V geometry:margin=1in +rm preprint.md diff --git a/paper/paper.md b/paper/paper.md index 50b3056..bba592b 100644 --- a/paper/paper.md +++ b/paper/paper.md @@ -89,7 +89,6 @@ bibliography: paper.bib # Summary - We are bioinformatics trainees at the University of Michigan who started a local chapter of Girls Who Code to provide a fun and supportive environment for high school women to learn the power of coding. @@ -285,7 +284,6 @@ skill as they learn it in the lessons; including importing and cleaning data, data visualization, and basic statistical analyses. ## Instructional Design - We modeled our instructional design in the style of Software Carpentry [@wilson_software_2016]. diff --git a/paper/preprint.pdf b/paper/preprint.pdf new file mode 100644 index 0000000..247e381 Binary files /dev/null and b/paper/preprint.pdf differ diff --git a/paper/preprint.yml b/paper/preprint.yml new file mode 100644 index 0000000..af744bc --- /dev/null +++ b/paper/preprint.yml @@ -0,0 +1,93 @@ +--- +title: 'Teaching Python for Data Science: Collaborative development of a modular & interactive curriculum' +tags: + - Data Science + - Python + - Jupyter + - Girls Who Code +author: + - Marlena Duda: + orcid: 0000-0003-2369-2225 + institute: 1 + - Kelly L. Sovacool: + orcid: 0000-0003-3283-829X + institute: 1 + - Negar Farzaneh: + orcid: 0000-0003-1200-5274 + institute: [1, 11] + - Vy Kim Nguyen: + orcid: 0000-0002-6128-0523 + institute: [1, 8] + - Sarah E. Haynes: + orcid: 0000-0003-3225-1691 + institute: 6 + - Hayley Falk: + orcid: 0000-0002-5198-1836 + institute: 1 + - Katherine L. Furman: + orcid: 0000-0002-0340-4292 + institute: [3, 4] + - Logan A. Walker: + orcid: 0000-0002-5378-3315 + institute: [5, 1] + - Rucheng Diao: + orcid: 0000-0002-2932-6755 + institute: 1 + - Morgan Oneka: + orcid: 0000-0002-9672-0445 + institute: 1 + - Audrey C. Drotos: + orcid: 0000-0001-5035-9319 + institute: 10 + - Alana Woloshin: + orcid: 0000-0002-5224-4221 + institute: 7 + - Gabrielle A. Dotson: + orcid: 0000-0001-6624-5332 + institute: 1 + - April Kriebel: + orcid: 0000-0003-0008-9044 + institute: 1 + - Lucy Meng: + orcid: 0000-0002-9363-1308 + institute: 9 + - Stephanie N. Thiede: + orcid: 0000-0003-0173-4324 + institute: 2 + - Zena Lapp: + orcid: 0000-0003-4674-2176 + institute: 1 + correspondence: "yes" + email: zenalapp@umich.edu + - Brooke N. Wolford: + orcid: 0000-0003-3153-1552 + institute: 1 + correspondence: "yes" + email: bwolford@umich.edu +institute: + - 1: + name: Department of Computational Medicine & Bioinformatics, University of Michigan + - 2: + name: Department of Microbiology & Immunology, University of Michigan + - 3: + name: Neuroscience Graduate Program, University of Michigan + - 4: + name: Michigan Neuroscience Institute, University of Michigan + - 5: + name: Biophysics Graduate Program, University of Michigan + - 6: + name: Department of Pathology, University of Michigan + - 7: + name: School of Information, University of Michigan + - 8: + name: Department of Environmental Health Sciences, University of Michigan + - 9: + name: Department of Electrical Engineering & Computer Sciences, University of California, Berkeley + - 10: + name: Kresge Hearing Research Institute, Department of Otolaryngology–Head and Neck Surgery, University of Michigan + - 11: + name: Michigan Center for Integrative Research in Critical Care, University of Michigan +date: 30 Apr. 2021 +bibliography: paper.bib +link-citations: true +---