docker-compose.yml

version: "3.7"
services:
  db:
    image: postgres:9.6.17-alpine
    volumes:
      - db-data:/var/lib/postgresql/data
    environment:
      POSTGRES_PASSWORD: "test"
      POSTGRES_USER: "postgres"
      POSTGRES_DB: "GDPDM"
    ports:
      - 5432:5432
  elasticsearch:
    image: elasticsearch:2.4.6-alpine
    ulimits:
       memlock:
         soft: -1
         hard: -1
    volumes:
      - es-data:/usr/share/elasticsearch/data
    ports:
      - 9200:9200
      - 9300:9300
    environment:
      es.cluster.name: GMISearch
      bootstrap.memory_lock: 'true'
      discovery.type: single-node
      ES_JAVA_OPTS: '-Xms8G -Xmx8G'
      xpack.security.enabled: 'false'
      xpack.monitoring.enabled: 'false'
      xpack.graph.enabled: 'false'
      xpack.watcher.enabled: 'false'
  broker:
    image: rabbitmq:3.8.2-management-alpine
    environment:
      RABBITMQ_DEFAULT_USER: "test_gwas"
      RABBITMQ_DEFAULT_PASS: "test!"
      RABBITMQ_DEFAULT_VHOST: "gwas_dev"
    ports:
      - 15672:15672
      - 5672:5672

  hdf5server:
    image: docker.artifactory.imp.ac.at/nordborglab/gwaportal/gwaportal-gwas-server:master
    volumes:
      - /mnt/gwasapp/DATA_NEW_BROWSER/:/mnt
    ports:
      - 8001:8000
    environment:
      GWAS_VIEWER_FOLDER: /mnt/gwas_results
      GENOTYPE_FOLDER: /mnt/PYGWAS_GENOTYPES
      GWAS_STUDY_FOLDER: /mnt/study

volumes:
  db-data:
  es-data: