diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index b8911070..3b157670 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -271,153 +271,6 @@ jobs: run: | valgrind --leak-check=full -s ctest -R "test_rest_vol" -VV - build_with_fetchcontent: - strategy: - fail-fast: false - matrix: - os: [ubuntu-latest] - python-version: ["3.10"] - vol-source: ['GIT', 'LOCAL_DIR'] - hdf5-branch: ["hdf5_1_14", "develop"] - - runs-on: ${{matrix.os}} - steps: - - uses: actions/checkout@v3 - with: - repository: HDFGroup/hdf5 - ref: ${{matrix.hdf5-branch}} - path: ${{github.workspace}}/hdf5 - - - name: Get REST VOL dependencies - run: | - sudo apt-get update - sudo apt-get install libcurl4-openssl-dev - sudo apt-get install libyajl-dev - - - name: Get REST VOL - if: ${{matrix.vol-source == 'LOCAL_DIR'}} - uses: actions/checkout@v3 - with: - path: ${{github.workspace}}/vol-rest - - - name: CMake Configure HDF5 + REST VOL from GIT - if: ${{matrix.vol-source == 'GIT'}} - run: | - mkdir ${{github.workspace}}/hdf5/build - cd ./build - cmake -DHDF5_VOL_REST_ENABLE_EXAMPLES=ON \ - -DHDF5_BUILD_HL_LIB=ON \ - -DBUILD_SHARED_LIBS=ON -DHDF5_ENABLE_SZIP_SUPPORT=OFF \ - -DHDF5_TEST_API=ON -DHDF5_VOL_ALLOW_EXTERNAL='GIT' \ - -DHDF5_VOL_URL01=https://github.com/HDFGroup/vol-rest.git \ - -DHDF5_VOL_VOL-REST_BRANCH=master \ - -DHDF5_VOL_VOL-REST_NAME="REST" -DHDF5_VOL_VOL-REST_TEST_PARALLEL=OFF \ - -DHDF5_ENABLE_Z_LIB_SUPPORT=OFF \ - -DCMAKE_BUILD_TYPE=RelWithDebInfo -DHDF5_ENABLE_THREADSAFE=OFF \ - -DCMAKE_INSTALL_PREFIX=${{github.workspace}}/hdf5install \ - .. - shell: bash - working-directory: ${{github.workspace}}/hdf5 - - - name: CMake Configure HDF5 + REST VOL from LOCAL_DIR - if: ${{matrix.vol-source == 'LOCAL_DIR'}} - run: | - mkdir ${{github.workspace}}/hdf5/build - sudo cmake -DHDF5_BUILD_HL_LIB=ON -DHDF5_VOL_REST_ENABLE_EXAMPLES=ON \ - -DHDF5_ENABLE_SZIP_SUPPORT=OFF \ - -DBUILD_SHARED_LIBS=ON -DHDF5_ENABLE_Z_LIB_SUPPORT=OFF \ - -DHDF5_TEST_API=ON -DHDF5_VOL_ALLOW_EXTERNAL=${{matrix.vol-source}} \ - -DHDF5_VOL_PATH01=${{github.workspace}}/vol-rest \ - -DHDF5_VOL_VOL-REST_NAME="REST" -DHDF5_VOL_VOL-REST_TEST_PARALLEL=OFF \ - -DCMAKE_BUILD_TYPE=RelWithDebInfo \ - -DCMAKE_INSTALL_PREFIX=${{github.workspace}}/hdf5install \ - --log-level=verbose \ - -B ${{github.workspace}}/hdf5/build - - shell: bash - working-directory: ${{github.workspace}}/hdf5/ - - - name: CMake Build HDF5 + REST VOL - run: | - sudo make - shell: bash - working-directory: ${{github.workspace}}/hdf5/build - - - name: CMake Install HDF5 + REST VOL - run: | - sudo make install - shell: bash - working-directory: ${{github.workspace}}/hdf5/build - - - name: Install valgrind - run: | - sudo apt update - sudo apt install valgrind - working-directory: ${{ github.workspace }} - - - uses: actions/checkout@v3 - with: - repository: HDFGroup/hsds - path: ${{github.workspace}}/hsds - - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v3 - with: - python-version: ${{ matrix.python-version }} - - - name: Install HSDS dependencies - shell: bash - run: | - python -m pip install --upgrade pip - python -m pip install pytest - if [ -f requirements.txt ]; then pip install -r requirements.txt; fi - - - name: Install HSDS package - shell: bash - run: | - cd ${{github.workspace}}/hsds - pip install -e . - - - name: Run HSDS unit tests - shell: bash - run: | - cd ${{github.workspace}}/hsds - pytest - - - name: Start HSDS - if: ${{ matrix.endpoint != 'http://127.0.0.1:5101'}} - run: | - cd ${{github.workspace}}/hsds - mkdir ${{github.workspace}}/hsdsdata && - mkdir ${{github.workspace}}/hsdsdata/hsdstest && - cp admin/config/groups.default admin/config/groups.txt && - cp admin/config/passwd.default admin/config/passwd.txt && - cp admin/config/groups.default admin/config/groups.txt && - cp admin/config/passwd.default admin/config/passwd.txt - ROOT_DIR=${{github.workspace}}/hsdadata ./runall.sh --no-docker 1 & - sleep 10 - working-directory: ${{github.workspace}}/hsds - - - name: Test HSDS - if: ${{matrix.endpoint != 'http://127.0.0.1:5101'}} - run: | - python tests/integ/setup_test.py - working-directory: ${{github.workspace}}/hsds - - - name: Test REST VOL - working-directory: ${{github.workspace}}/hdf5/build/ - run: | - sudo \ - HDF5_PLUGIN_PATH="${{github.workspace}}/hdf5install/lib" HDF5_VOL_CONNECTOR=REST \ - ADMIN_PASSWORD=admin ADMIN_USERNAME=admin \ - USER_NAME=test_user1 USER_PASSWORD=test \ - USER2_NAME=test_user2 USER2_PASSWORD=test \ - HSDS_USERNAME=test_user1 HSDS_PASSWORD=test \ - HSDS_PATH=/home/test_user1/ HDF5_API_TEST_PATH_PREFIX=/home/test_user1/ \ - HSDS_ENDPOINT=http+unix://%2Ftmp%2Fhs%2Fsn_1.sock HDF5_VOL_CONNECTOR=REST \ - ROOT_DIR=${{github.workspace}}/hsdsdata BUCKET_NAME=hsdstest \ - valgrind --leak-check=full -s ctest -R "test_rest_vol" -VV - # TODO: Attribute, dataset, link, and testhdf5 tests currently fail # - name: Test REST VOL with API # run: |