DESCRIPTION

Package: condiments
Type: Package
Title: Differential Topology, Progression and Differentiation.
Version: 1.5.0
Authors@R: c(person("Hector", "Roux de Bezieux", role = c("aut", "cre"),
                     email = "hector.rouxdebezieux@berkeley.edu",
		     comment = c(ORCID = "0000-0002-1489-8339")),
		person("Koen", "Van den Berge", role = c("aut" , "ctb")),
		person("Kelly","Street", role = c("aut", "ctb")))
Description: This package encapsulate many functions to conduct a differential topology analysis. It focuses on analyzing an 'omic dataset with multiple conditions. While the package is mostly geared toward scRNASeq, it does not place any restriction on the actual input format.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://hectorrdb.github.io/condiments/index.html
Depends: R (>= 4.0)
VignetteBuilder: knitr
biocViews:
    RNASeq,
    Sequencing,
    Software,
    SingleCell,
    Transcriptomics,
    MultipleComparison,
    Visualization
BugReports: https://github.com/HectorRDB/condiments/issues
Imports: 
    slingshot (>= 1.9),
    mgcv,
    RANN,
    stats,
    SingleCellExperiment,
    SummarizedExperiment,
    utils,
    magrittr,
    dplyr (>= 1.0),
    Ecume (>= 0.9.1),
    methods,
    pbapply,
    matrixStats,
    BiocParallel,
    TrajectoryUtils,
    igraph,
    distinct
RoxygenNote: 7.1.2
Suggests: 
    knitr,
    testthat,
    rmarkdown,
    covr,
    viridis,
    ggplot2,
    RColorBrewer,
    randomForest,
    tidyr,
    TSCAN,
    DelayedMatrixStats