From d1560ee63432130e6ad35e72f062c6e6a7fd5961 Mon Sep 17 00:00:00 2001 From: Denis Yuen Date: Wed, 14 Sep 2016 15:45:41 -0400 Subject: [PATCH] Update Dockstore.cwl --- Dockstore.cwl | 9 ++------- 1 file changed, 2 insertions(+), 7 deletions(-) diff --git a/Dockstore.cwl b/Dockstore.cwl index 5ee25df..d26bb03 100644 --- a/Dockstore.cwl +++ b/Dockstore.cwl @@ -9,7 +9,7 @@ dct:creator: foaf:mbox: mailto:keiranmraine@gmail.com requirements: - class: DockerRequirement - dockerPull: quay.io/pancancer/pcawg-sanger-cgp-workflow:feature_cwl1 + dockerPull: quay.io/pancancer/pcawg-sanger-cgp-workflow:2.0.0-cwl1 cwlVersion: v1.0 @@ -73,10 +73,5 @@ baseCommand: [python, /home/seqware/CGP-Somatic-Docker/scripts/run_seqware_workf doc: "The Sanger's Cancer Genome Project core somatic calling workflow from \nthe\ \ ICGC PanCancer Analysis of Whole Genomes (PCAWG) project.\nFor more information\ \ see the PCAWG project [page](https://dcc.icgc.org/pcawg) and our GitHub\n[page](https://github.com/ICGC-TCGA-PanCancer)\ - \ for our code including the source for\n[this workflow](https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker).\n\ - ```\nUsage:\n# fetch CWL\n$> dockstore cwl --entry quay.io/pancancer/pcawg-sanger-cgp-workflow:2.0.0\ - \ > Dockstore.cwl\n# make a runtime JSON template and edit it\n$> dockstore convert\ - \ cwl2json --cwl Dockstore.cwl > Dockstore.json\n# run it locally with the Dockstore\ - \ CLI\n$> dockstore launch --entry quay.io/pancancer/pcawg-sanger-cgp-workflow:2.0.0\ - \ \\\n --json test1.json\n```\n" + \ for our code including the source for\n[this workflow](https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker)."