DESCRIPTION

Package: EasyCircR
Title:  Detection and reconstruction of circular RNAs post-transcriptional regulatory interaction networks
Version: 1.0
Authors: Antonino Aparo, Simone Avesani, Luca Parmigiani, Sara Napoli, Francesco Bertoni, Vincenzo Bonnici, Luciano Cascione, Rosalba Giugno.
Description:  EasyCircR is a novel R package that combines circRNA detection and reconstruction with posttranscriptional gene expression 
            analysis (exon-intron split analysis) and miRNA response element prediction.
            The package enables estimation and visualization of circRNA-miRNA-mRNA interactions through an intuitive
            Shiny application, taking advantage of the post-transcriptional regulatory nature of circRNAs and excluding
            unrealistic regulatory outcomes.
License: MIT
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests: 
    testthat (>= 3.0.0)
Config/testthat/edition: 3
biocViews:
Imports:
    dplyr,
    GenomicFeatures,
    eisaR,
    parallel,
    QuasR,
    msigdbr,
    tools,
    magrittr,
    edgeR,
    limma,
    R.utils,
    bedr,
    multiMiR,
    msigdbr,
    ggplot2,
    Biobase,
    igraph,
    network,
    shiny,
    shinyjs,
    shinyAce,
    shinycssloaders,
    shinydashboard,
    shinyBS,
    shinyalert,
    rclipboard,
    writexl,
    plotly,
    DT,
    pdftools,
    forcats,
    circlize,
    markdown,
    scales,
    gridExtra,
    writexl,
    pdftools,
    ggrepel,
    shinycssloaders,
    shinydashboard,
    ggnet,
    Rbowtie,
    Rhisat2
Remotes: 
  github::briatte/ggnet