Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Group creation with RCC files #2

Open
Flash1593 opened this issue Jul 21, 2021 · 1 comment
Open

Group creation with RCC files #2

Flash1593 opened this issue Jul 21, 2021 · 1 comment

Comments

@Flash1593
Copy link

I have total 44 RCC files from two groups - LA (22) & TNBC (22) having 77 genes expression values. I wanted to assign them in two groups for downstream analysis using this command

groups <- c("LA","TNBC")
my_cutoff = 77
nanoR::plotGroupBoxplot(test, groups, title="Boxplot, countCutoff = my_cutoff")

But it gives me this error along with the plot of two groups with all samples mixed in each group.

Using as id variables
Warning message:
In if (is.na(groups)) { :
the condition has length > 1 and only the first element will be used

How do I assign samples to groups in R analysis?

@arcolombo
Copy link

groups = c(rep("LA",22),rep("TNBC",22)) according to the RCC files that are read in together.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants