diff --git a/.github/workflows/runTest.yml b/.github/workflows/runTest.yml index 8b0ff0a..a65ffc1 100644 --- a/.github/workflows/runTest.yml +++ b/.github/workflows/runTest.yml @@ -17,15 +17,15 @@ jobs: - name: run YACHT run: python run_YACHT.py --json gtdb_ani_thresh_0.95_config.json --sample_file 'tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1 - name: test-unit - run: pytest tests/test_unit.py --cov=./ --cov-report=xml + run: pytest tests/test_unit.py --cov=./ --cov-report xml:covunit.xml - name: test-utils - run: pytest tests/test_utils.py --cov=./ --cov-report=xml + run: pytest tests/test_utils.py --cov=./ --cov-report xml:covutils.xml - name: test-workflow - run: pytest tests/test_workflow.py --cov=./ --cov-report=xml + run: pytest tests/test_workflow.py --cov=./ --cov-report xml:covworkflow.xml - name: integration-tests - run: pytest -vv tests/integration_tests.py --cov=./ --cov-report=xml + run: pytest -vv tests/integration_tests.py --cov=./ --cov-report xml:covntegration.xml - name: unit-tests - run: pytest -vv tests/unittests.py --cov=./ --cov-report=xml + run: pytest -vv tests/unittests.py --cov=./ --cov-report xml:covunittests.xml - name: Upload coverage reports to Codecov uses: codecov/codecov-action@v3 env: