diff --git a/.github/workflows/runTest.yml b/.github/workflows/runTest.yml
index 5ccb9b7..1a5daaa 100644
--- a/.github/workflows/runTest.yml
+++ b/.github/workflows/runTest.yml
@@ -13,9 +13,9 @@ jobs:
         activate-environment: yacht_env
         environment-file: env/yacht_env.yml
     - name: make training data
-      run: python srcs/make_training_data_from_sketches.py --ref_file 'tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ./ --force
+      run: python srcs.make_training_data_from_sketches.py --ref_file 'tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ./ --force
     - name: run YACHT
-      run: python srcs/run_YACHT.py --json gtdb_ani_thresh_0.95_config.json --sample_file 'tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1
+      run: python srcs.run_YACHT.py --json gtdb_ani_thresh_0.95_config.json --sample_file 'tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1
     - name: test-unit
       run: pytest tests/test_unit.py --cov=./  --cov-report xml:covunit.xml
     - name: test-utils