diff --git a/.github/workflows/runTest.yml b/.github/workflows/runTest.yml index 402307a..554ce8a 100644 --- a/.github/workflows/runTest.yml +++ b/.github/workflows/runTest.yml @@ -13,7 +13,7 @@ jobs: # activate-environment: yacht_env # environment-file: env/yacht_env.yml - name: make training data - run: python srcs/srcs.make_training_data_from_sketches.py --ref_file '../tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ../ --force + run: python -m srcs/srcs.make_training_data_from_sketches.py --ref_file '../tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ../ --force - name: run YACHT run: python srcs.run_YACHT.py --json ../gtdb_ani_thresh_0.95_config.json --sample_file '../tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1 - name: test-unit