From 888b2604b08fe0275d99c9a048433dfa9395e89d Mon Sep 17 00:00:00 2001 From: Mohsen Taheri Date: Thu, 16 Nov 2023 19:17:25 -0500 Subject: [PATCH] test errors due to directory changes --- .github/workflows/runTest.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/runTest.yml b/.github/workflows/runTest.yml index 402307a..554ce8a 100644 --- a/.github/workflows/runTest.yml +++ b/.github/workflows/runTest.yml @@ -13,7 +13,7 @@ jobs: # activate-environment: yacht_env # environment-file: env/yacht_env.yml - name: make training data - run: python srcs/srcs.make_training_data_from_sketches.py --ref_file '../tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ../ --force + run: python -m srcs/srcs.make_training_data_from_sketches.py --ref_file '../tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ../ --force - name: run YACHT run: python srcs.run_YACHT.py --json ../gtdb_ani_thresh_0.95_config.json --sample_file '../tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1 - name: test-unit