diff --git a/tests/test_y_integration_tests.py b/tests/test_y_integration_tests.py index 3dd8009..d7f2cf8 100644 --- a/tests/test_y_integration_tests.py +++ b/tests/test_y_integration_tests.py @@ -74,13 +74,13 @@ def test_run_yacht(): assert exists('result.xlsx') def test_run_pretrained_ref_db(): - cmd = "yacht download pretrained_ref_db --database gtdb --db_version rs214 --k 31 --ani_thresh 0.9995 --outfolder ./" + cmd = "yacht download pretrained_ref_db --database gtdb --db_version rs214 --k 31 --ani_thresh 0.80 --outfolder ./" res = subprocess.run(cmd, shell=True, check=True) assert res.returncode == 0 -@pytest.mark.slow +# @pytest.mark.slow def test_run_yacht_pretrained_ref_db(): - cmd = f"yacht run --json ./gtdb-rs214-reps.k31_0.9995_pretrained/gtdb-rs214-reps.k31_0.9995_config.json --sample_file '{project_path}/tests/testdata/sample.sig.zip' --significance 0.99 --num_threads 32 --min_coverage_list 1 0.6 0.2 0.1 --out ./result_pretrained.xlsx" + cmd = f"yacht run --json ./gtdb-rs214-reps.k31_0.80_pretrained/gtdb-rs214-reps.k31_0.80_config.json --sample_file '{project_path}/tests/testdata/sample.sig.zip' --significance 0.99 --num_threads 32 --min_coverage_list 1 0.6 0.2 0.1 --out ./result_pretrained.xlsx" res = subprocess.run(cmd, shell=True, check=True) assert res.returncode == 0