diff --git a/.github/workflows/runTest.yml b/.github/workflows/runTest.yml
index b366db1..d239673 100644
--- a/.github/workflows/runTest.yml
+++ b/.github/workflows/runTest.yml
@@ -17,15 +17,15 @@ jobs:
     - name: run YACHT
       run: python run_YACHT.py --json gtdb_ani_thresh_0.95_config.json --sample_file 'tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1
     - name: test-unit
-      run: pytest tests/test_unit.py
+      run: pytest tests/test_unit.py --cov
     - name: test-utils
-      run: pytest tests/test_utils.py
+      run: pytest tests/test_utils.py --cov
     - name: test-workflow
-      run: pytest tests/test_workflow.py
+      run: pytest tests/test_workflow.py --cov
     - name: integration-tests
-      run: pytest -vv tests/integration_tests.py
+      run: pytest -vv tests/integration_tests.py --cov
     - name: unit-tests
-      run: pytest -vv tests/unittests.py
+      run: pytest -vv tests/unittests.py --cov
     - name: Upload coverage reports to Codecov
       uses: codecov/codecov-action@v3
       env: