From 4d77d20504a372a182cadec9765468a8a31d8b98 Mon Sep 17 00:00:00 2001 From: Mohsen Taheri Date: Thu, 16 Nov 2023 20:22:12 -0500 Subject: [PATCH] test errors due to directory changes --- .github/workflows/runTest.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/runTest.yml b/.github/workflows/runTest.yml index 469f394..568fb8a 100644 --- a/.github/workflows/runTest.yml +++ b/.github/workflows/runTest.yml @@ -13,9 +13,9 @@ jobs: activate-environment: yacht_env environment-file: env/yacht_env.yml - name: make training data - run: python -m srcs.make_training_data_from_sketches --ref_file './tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ./ --force + run: python -m src.make_training_data_from_sketches --ref_file './tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ./ --force - name: run YACHT - run: python -m srcs.run_YACHT --json ./gtdb_ani_thresh_0.95_config.json --sample_file './tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1 + run: python -m src.run_YACHT --json ./gtdb_ani_thresh_0.95_config.json --sample_file './tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1 - name: test-unit run: pytest tests/test_unit.py --cov=./ --cov-report xml:covunit.xml - name: test-utils