From 6195a1700be5dd603163ce3bae4e79fe5562a0ac Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?C=C3=A9line=20Aubert?= <aubertceline@ymail.com>
Date: Thu, 24 Mar 2022 18:15:57 +0100
Subject: [PATCH] Added cropping system class to gather cropping system types
 below it

---
 src/ontology/agro-edit.owl | 14 +++++++++++---
 1 file changed, 11 insertions(+), 3 deletions(-)

diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl
index f39c062..c073528 100644
--- a/src/ontology/agro-edit.owl
+++ b/src/ontology/agro-edit.owl
@@ -587,6 +587,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000633>))
 Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000634>))
 Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000635>))
 Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000637>))
+Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000638>))
 Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00002000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00002001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00002002>))
@@ -3957,7 +3958,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/AGRO_00000469> "rotation"@en)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/AGRO_00000469> "rotation process"@en)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000469> "crop rotation process"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000469> <http://purl.obolibrary.org/obo/OBI_0000011>)
+SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000469> <http://purl.obolibrary.org/obo/AGRO_00000638>)
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000469> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/AGRO_00000487>))
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000469> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/AGRO_00000301>))
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000469> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/ENVO_00000114>))
@@ -4053,7 +4054,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/AGRO_00000481> "mono-cropping"@en)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/AGRO_00000481> "monocropping"@en)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000481> "monoculture"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000481> <http://purl.obolibrary.org/obo/OBI_0000011>)
+SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000481> <http://purl.obolibrary.org/obo/AGRO_00000638>)
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000481> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/AGRO_00000301>))
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000481> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/ENVO_00000114>))
 
@@ -4252,7 +4253,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000515> ObjectSomeValuesFrom(<
 AnnotationAssertion(Annotation(<http://purl.org/dc/elements/1.1/source> "https://eap.mcgill.ca/CSI_1.htm") Annotation(<http://purl.org/dc/elements/1.1/source> "https://en.wikipedia.org/wiki/Intercropping") Annotation(<http://purl.org/dc/elements/1.1/source> "https://www.researchgate.net/publication/224934832_Annual_intercrops_An_alternative_pathway_for_sustainable_agriculture#pf4") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000516> "An agricultural process in wich two or more crops are cultivated in the same space at the same time."@en)
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000516> <http://orcid.org/0000-0001-6284-4821>)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000516> "intercropping"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000516> <http://purl.obolibrary.org/obo/AGRO_00002071>)
+SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000516> <http://purl.obolibrary.org/obo/AGRO_00000638>)
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000516> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/AGRO_00000301>))
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000516> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/ENVO_00000114>))
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000516> ObjectMinCardinality(2 <http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/AGRO_00000325>))
@@ -5091,6 +5092,13 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/AGRO_00000637> ObjectSomeValue
 EquivalentClasses(<http://purl.obolibrary.org/obo/AGRO_00000637> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/AGRO_00000357>))
 SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000637> <http://purl.obolibrary.org/obo/PATO_0015009>)
 
+# Class: <http://purl.obolibrary.org/obo/AGRO_00000638> (cropping system)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://extension.cropsciences.illinois.edu/handbook/pdfs/chapter05.pdf") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000638> "An agricultural process in which crops are cultivated following crop sequences and management techniques."@en)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000638> <http://orcid.org/0000-0001-6284-4821>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000638> "cropping system"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000638> <http://purl.obolibrary.org/obo/AGRO_00002071>)
+
 # Class: <http://purl.obolibrary.org/obo/AGRO_00002000> (relay cropping experiment)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://www.oisat.org/control_methods/cultural__practices/intercropping.html") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00002000> "An inter-cropping experiement dunring which two or more crops are grown on the same field.  The planting of the second crop occurs after the first one has completed its development.")