.pre-commit-config.yaml

repos:
  - repo: local
    hooks:
      - id: docs_schema
        name: docs_schema
        entry: parse_docs -p docs -e .md -s intro links -oj nextflow_schema.json
        language: python
        always_run: true
        pass_filenames: false
        additional_dependencies:
          - epi2melabs
      - id: docs_readme
        name: docs_readme
        entry: parse_docs -p docs -e .md -s header intro quickstart links -ot README.md
        language: python
        always_run: true
        pass_filenames: false
        additional_dependencies:
          - epi2melabs
  - repo: https://github.com/pycqa/flake8
    rev: 5.0.4
    hooks:
      - id: flake8
        pass_filenames: false
        additional_dependencies:
          - flake8-rst-docstrings
          - flake8-docstrings
          - flake8-import-order
          - flake8-forbid-visual-indent
          - pep8-naming
          - flake8-no-types
          - flake8-builtins
          - flake8-absolute-import
          - flake8-print
        args: [
            "bin",
            "--import-order-style=google",
            "--statistics",
            "--max-line-length=88",
        ]