Installation for standalone generation of CIPHER input files

The best way to use this code is by setting up a virtual environment and installing all the packages listed in requirements.txt. You can set up a virtual environment like this:

python -m venv .venv
.venv/Scripts/activate
pip install -r requirements.txt

Alternatively, it is also possible to use a conda environment.

Notebook

After the environment is set up and activated, you can launch jupyter to run the demo_cipher_inputs.ipynb notebook.

You will need to install the Matlab python package by following the instructions here.
Note that you must run this code with a version of Python 3 that is compatible with your version of Matlab, as shown here.
Note that for now, MatFlow can only be used on up to Python 3.8.
The best way to use this code is by setting up a virtual environment and installing all the packages listed in requirements.txt, plus the Matlab Python package. You can set up a virtual environment like this (make sure python is a version of python that is compatible with your version of Matlab):

python -m venv .venv
.venv/Scripts/activate
pip install -r requirements.txt

Then follow the instructions linked above to install the Matlab Python package; make sure you do it within your new virtual environment.

Alternatively, it is also possible to use a conda environment.

After the environment is set up and activated, you can launch jupyter to run the demo_segmentation.ipynb notebook.