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Welcome to the bohra wiki!!

Thanks for checking out the bohra wiki! Here you will find information regarding installation options, pipeline options, setting up a run and see some sample reports.

Bohra is microbial genomics pipeline, designed predominantly for use in public health, but may also be useful in research settings. At a minimum the pipeline takes as input a tab-delimited file with the isolate IDs followed by the path to READ1 and READ2, where reads are illumina reads (other platforms are not supported at this stage).

Bohra was inspired by Nullarbor (https://github.com/tseemann/nullarbor) to be used in public health microbiology labs for analysis of short reads from microbiological samples. The workflow itself is written in Nextflow with a 'runner' tool for setup, written in python.