From 477d20dc7630bc4bd9c8ac7c2124f9edc0216525 Mon Sep 17 00:00:00 2001 From: "Jacob S. Zelko" Date: Mon, 26 Jun 2023 09:12:33 -0700 Subject: [PATCH] Add warning within assumptions --- README-run-etl.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README-run-etl.md b/README-run-etl.md index e2d4cbb..57c77c5 100644 --- a/README-run-etl.md +++ b/README-run-etl.md @@ -2,6 +2,8 @@ This README overviews running the MIMIC-OMOP ETL from the ground up on a PostgreSQL server. You will need an installation of PostgreSQL 9.6+ in order to run the ETL. You will also need MIMIC-III installed on this instance of postgres, see here for details: https://mimic.physionet.org/gettingstarted/dbsetup/ +**WARNING:** By following the steps for MIMIC-III postgres set-up, the MIMIC-III data will be located in a new database called `mimic` within your postgres instance. For the following steps, you may need to change the `dbname` variable to `mimic` to reflect this or otherwise, the ETL will not be able to find the correct paths across your postgres instance. + This README will assume the following: * MIMIC-III v1.4 is available in the `mimic` database under the `mimiciii` schema