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Cannot Upload project to SynBioHub. #605

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buggsley opened this issue Jun 3, 2020 · 2 comments
Open

Cannot Upload project to SynBioHub. #605

buggsley opened this issue Jun 3, 2020 · 2 comments
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@buggsley
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buggsley commented Jun 3, 2020

iBioSim Version 3.0.0

Operating system: Windows 10

Bug reported by: pfontanarrosa@gmail.com

Description:
When trying to upload, I get the following error:
org.synbiohub.frontend.SynBioHubException: 400 org.sbolstandard.core2.SBOLValidationException: sbol-10809:
If a MapsTo is contained by a Module
then the remote property of the MapsTo MUST refer to a FunctionalComponent in the ModuleDefinition that is referenced by the definition property of the Module.
Reference: SBOL Version 2.3.0 Section 7.7.3 on page 29
:https://synbiohub.org/user/pfontanarrosa/Testingupload/Simulation_Environment_md/C1/YFP/1
at org.sbolstandard.core2.MapsTo.setRemote(MapsTo.java:242)
at org.sbolstandard.core2.SBOLDocument.updateReferences(SBOLDocument.java:3122)
at org.sbolstandard.core2.SBOLDocument.changeURIPrefixVersion(SBOLDocument.java:3310)
at org.synbiohub.PrepareSubmissionJob.execute(PrepareSubmissionJob.java:349)
at org.synbiohub.Main$1.run(Main.java:30)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)

@buggsley buggsley added the BUG label Jun 3, 2020
@Fontanapink
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Here is the project I am trying to upload.
UploadProject.zip

@cjmyers
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cjmyers commented Sep 20, 2020

I imported this OMEX file into a new project and uploaded successfully. Is this still having problems for you? Sorry for the long long delay on this one.

@LukasBuecherl LukasBuecherl added this to the 3.2 milestone Apr 16, 2021
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