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_toc.yml
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# Table of contents
# Learn more at https://jupyterbook.org/customize/toc.html
format: jb-book
root: README
chapters:
- file: notebooks/intro/intro_overview
sections:
- file: notebooks/intro/components
sections:
- file: notebooks/intro/coupling
- file: notebooks/intro/cesm_webpage
sections:
- file: notebooks/intro/project
- file: notebooks/intro/getting_involved
- file: notebooks/intro/getting_help
- file: notebooks/intro/community_experiments
sections:
- file: notebooks/intro/cesm_expts/clim_data_gateway
- file: notebooks/intro/cesm_expts/clim_data_guide
- file: notebooks/prereqs/prereqs_overview
sections:
- file: notebooks/prereqs/exercises
- file: notebooks/basics/basics_overview
sections:
- file: notebooks/basics/cesm_workspaces
- file: notebooks/basics/code_overview
sections:
- file: notebooks/basics/code/git_download_cesm
- file: notebooks/basics/code/cesm_code_explore
- file: notebooks/basics/cesm_workflow
sections:
- file: notebooks/basics/cesm_workflow/create_newcase
- file: notebooks/basics/cesm_workflow/case_setup
- file: notebooks/basics/cesm_workflow/case_build
- file: notebooks/basics/cesm_workflow/case_submit
- file: notebooks/basics/cesm_workflow/model_output
- file: notebooks/basics/cesm_workflow/checking_jobs_and_status
- file: notebooks/basics/cesm_workflow/create_clone
- file: notebooks/basics/exercises_overview
sections:
- file: notebooks/basics/exercises/first_B1850
- file: notebooks/basics/exercises/second_B1850
- file: notebooks/basics/exercises/examine_history_B1850
- file: notebooks/basics/exercises/extra
- file: notebooks/basics/exercises/review_questions
- file: notebooks/modifications/xml
sections:
- file: notebooks/modifications/xml/overview
- file: notebooks/modifications/xml/case_xml_files
- file: notebooks/modifications/xml/case_xml_change
- file: notebooks/modifications/xml/model_control_files
- file: notebooks/modifications/xml/run_length
sections:
- file: notebooks/modifications/xml/run_length/starting_and_stopping
- file: notebooks/modifications/xml/run_length/restarting
- file: notebooks/modifications/xml/run_length/changing_run_length
- file: notebooks/modifications/xml/run_length/timing_files
- file: notebooks/modifications/xml/modify_run_type
sections:
- file: notebooks/modifications/xml/modify_run_type/hybrid_branch_restart
- file: notebooks/modifications/xml/modify_run_type/run_variables
- file: notebooks/modifications/xml/physics_timestep
- file: notebooks/modifications/xml/other_xml_variables
- file: notebooks/modifications/xml/exercises
sections:
- file: notebooks/modifications/xml/exercises/xml_length_exercise
- file: notebooks/modifications/xml/exercises/xml_runtype_exercise
- file: notebooks/modifications/xml/exercises/xml_timestep_exercise
- file: notebooks/namelist/namelist
sections:
- file: notebooks/namelist/overview
- file: notebooks/namelist/documentation
- file: notebooks/namelist/output
sections:
- file: notebooks/namelist/output/output_cam
- file: notebooks/namelist/output/output_clm
- file: notebooks/namelist/output/output_cice
- file: notebooks/namelist/output/output_pop
- file: notebooks/namelist/exercises_overview
sections:
- file: notebooks/namelist/exercises/exercise_cam_output
- file: notebooks/namelist/exercises/exercise_tuning_parameter
- file: notebooks/troubleshooting/troubleshooting
sections:
- file: notebooks/troubleshooting/log_files
- file: notebooks/troubleshooting/debugging_flag
- file: notebooks/troubleshooting/exercises_overview
sections:
- file: notebooks/troubleshooting/exercises/troubleshooting_cam
- file: notebooks/sourcemods/sourcemods
sections:
- file: notebooks/sourcemods/overview
- file: notebooks/sourcemods/add_fields_cam
- file: notebooks/sourcemods/exercises_overview
sections:
- file: notebooks/sourcemods/exercises/exercise_add_field
- file: notebooks/sourcemods/exercises/exercise_rain_threshold
- file: notebooks/challenge/challenge
sections:
- file: notebooks/challenge/cam/cam
sections:
- file: notebooks/challenge/cam/exercise_1
- file: notebooks/challenge/cam/exercise_2
- file: notebooks/challenge/cam/exercise_3
- file: notebooks/challenge/cam/exercise_4
- file: notebooks/challenge/cam/exercise_5
- file: notebooks/challenge/cam/exercise_6
- file: notebooks/challenge/paleo/paleo
sections:
- file: notebooks/challenge/paleo/exercise_1
- file: notebooks/challenge/paleo/exercise_2
- file: notebooks/challenge/paleo/exercise_3
- file: notebooks/challenge/cam-chem_waccm/cam-chem_waccm
sections:
- file: notebooks/challenge/cam-chem_waccm/exercise_1
- file: notebooks/challenge/cam-chem_waccm/exercise_2
- file: notebooks/challenge/cam-chem_waccm/exercise_3
- file: notebooks/challenge/cam-chem_waccm/visualization
- file: notebooks/challenge/clm_ctsm/clm_ctsm
sections:
- file: notebooks/challenge/clm_ctsm/clm_exercise_1
- file: notebooks/challenge/clm_ctsm/clm_exercise_2
- file: notebooks/challenge/clm_ctsm/clm_exercise_3
- file: notebooks/challenge/pop/pop
sections:
- file: notebooks/challenge/pop/pop_exercise_1
- file: notebooks/challenge/pop/pop_exercise_2
- file: notebooks/challenge/pop/pop_exercise_3
- file: notebooks/challenge/pop/pop_exercise_4
- file: notebooks/challenge/mom/mom_exercise_5
- file: notebooks/challenge/cice/cice
sections:
- file: notebooks/challenge/cice/cice_exercise_1
- file: notebooks/challenge/cice/cice_exercise_2
- file: notebooks/challenge/cice/cice_exercise_3
- file: notebooks/challenge/cism/cism
sections:
- file: notebooks/challenge/cism/cism_exercise_1
- file: notebooks/challenge/cism/cism_exercise_2
- file: notebooks/challenge/cism/cism_exercise_3
- file: notebooks/challenge/bgc/bgc
sections:
- file: notebooks/challenge/bgc/bgc_exercise_1
- file: notebooks/diagnostics/diagnostics
sections:
- file: notebooks/diagnostics/cam/cam
sections:
- file: notebooks/diagnostics/cam/basics_cam
- file: notebooks/diagnostics/cam/advanced_cam
- file: notebooks/diagnostics/cam/cam_se_native_example
- file: notebooks/diagnostics/cam-chem_waccm
- file: notebooks/diagnostics/clm_ctsm/clm_ctsm
sections:
- file: notebooks/diagnostics/clm_ctsm/basics_clm
- file: notebooks/diagnostics/pop/pop
sections:
- file: notebooks/diagnostics/pop/basics_pop
- file: notebooks/diagnostics/pop/advanced_pop
- file: notebooks/diagnostics/mom/basics_mom
- file: notebooks/diagnostics/cice/cice
sections:
- file: notebooks/diagnostics/cice/basics_cice
- file: notebooks/diagnostics/cice/advanced_cice
- file: notebooks/diagnostics/cupid
- file: notebooks/diagnostics/additional/additional
sections:
- file: notebooks/diagnostics/additional/postprocessing
- file: notebooks/diagnostics/additional/cvdp
- file: notebooks/diagnostics/additional/analysis_tools
- file: notebooks/diagnostics/additional/adf
- file: notebooks/diagnostics/additional/uxarray
- file: notebooks/resources/resources_overview
sections:
- file: notebooks/resources/ncar_hpc
sections:
- file: notebooks/resources/ncar_hpc_module
- file: notebooks/resources/tutorial_one_time_setup
- file: notebooks/resources/tutorial_queue_account
- file: notebooks/resources/terminals
- file: notebooks/resources/unix
sections:
- file: notebooks/resources/unix-cheatsheet
- file: notebooks/resources/text_editors
- file: notebooks/resources/github
- file: notebooks/resources/fortran
- file: notebooks/resources/netcdf
- file: notebooks/resources/porting