diff --git a/.gitignore b/.gitignore
index 66f70ef..d86dbb8 100644
--- a/.gitignore
+++ b/.gitignore
@@ -54,3 +54,12 @@ rsconnect/
 .Rproj.user
 inst/doc
 docs
+
+data-raw/
+
+._*
+
+*.error
+*.log
+
+data/geo_tox_data_manuscript.RData
\ No newline at end of file
diff --git a/run.sh b/run.sh
new file mode 100644
index 0000000..cc14d18
--- /dev/null
+++ b/run.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+#SBATCH --job-name=paper_demo
+#SBATCH --output=paper_demo.log
+#SBATCH --error=paper_demo.error
+#SBATCH --mail-user=messierkp@nih.gov
+#SBATCH --mail-type=END,FAIL
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=4
+#SBATCH --mem=36g
+#SBATCH --partition=highmem
+
+Rscript -e "rmarkdown::render('vignettes/paper-demo-01.Rmd')"
\ No newline at end of file