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replace load_gcfs function #122

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Tracked by #147
CunliangGeng opened this issue Mar 7, 2023 · 1 comment
Closed
1 task done
Tracked by #147

replace load_gcfs function #122

CunliangGeng opened this issue Mar 7, 2023 · 1 comment
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GEN genomics related issues

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@CunliangGeng
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CunliangGeng commented Mar 7, 2023

Function load_gcfs should be replaced with new independent functions from genomics.py.

  • replace load_gcfs function with independent steps

Step 1: load all strains
Step 2: load all bgcs
Step 3: load all gcfs
Step 4: connect bgc to strain with map_strain_to_bgc
Step 5: connect gcf to bgcs with map_bgc_to_gcf
Step 6: filter_mibig_only_gcf
Step 7: get clean gcfs, bgcs and strains with get_bgcs_from_gcfs and get_strains_from_bgcs

@CunliangGeng CunliangGeng self-assigned this Mar 7, 2023
@CunliangGeng CunliangGeng added the GEN genomics related issues label Mar 7, 2023
@CunliangGeng
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Solved #185.

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