diff --git a/_build/doctrees/environment.pickle b/_build/doctrees/environment.pickle index 53c8eb9..b3afa72 100644 Binary files a/_build/doctrees/environment.pickle and b/_build/doctrees/environment.pickle differ diff --git a/_build/doctrees/index.doctree b/_build/doctrees/index.doctree index feb1485..084f6cd 100644 Binary files a/_build/doctrees/index.doctree and b/_build/doctrees/index.doctree differ diff --git a/_build/doctrees/intro.doctree b/_build/doctrees/intro.doctree index a39d1a7..781aa88 100644 Binary files a/_build/doctrees/intro.doctree and b/_build/doctrees/intro.doctree differ diff --git a/_build/doctrees/staff.doctree b/_build/doctrees/staff.doctree index 0d14017..07d5a0e 100644 Binary files a/_build/doctrees/staff.doctree and b/_build/doctrees/staff.doctree differ diff --git a/_build/doctrees/useful.doctree b/_build/doctrees/useful.doctree index 51be51c..28371e4 100644 Binary files a/_build/doctrees/useful.doctree and b/_build/doctrees/useful.doctree differ diff --git a/_build/html/_sources/useful.rst.txt b/_build/html/_sources/useful.rst.txt index 6a9d2e3..76235f0 100644 --- a/_build/html/_sources/useful.rst.txt +++ b/_build/html/_sources/useful.rst.txt @@ -63,6 +63,19 @@ XANES scan - *Run a XANES scan. This scan has 3 regions with different steps spa samplename='Fe foil', filename='Fe_foil'])) +Metadata +******** +Print the ``start`` or ``stop`` document for a scan - *A scan ID of 12345 is assumed. A value of -1 can be used to see the previous scan.* :: + + Bluesky@SRX [1] db[12345].start + Bluesky@SRX [2] db[12345].stop + +Print the ``baseline`` information for a scan - *baseline will collect the motor positions at the start (column 1) and completion (column 2) of a scan. There are many motors positions captured so it is helpful to filter the list of values. A scan ID of 12345 is assumed.* :: + + Bluesky@SRX [3] print_baseline(12345) + Bluesky@SRX [4] print_baseline(12345, key_filter="nano_stage") + + Troubleshooting *************** Pause a scan - *The scan will pause at the next checkpoint.* :: diff --git a/_build/html/_static/basic.css b/_build/html/_static/basic.css index 7577acb..30fee9d 100644 --- a/_build/html/_static/basic.css +++ b/_build/html/_static/basic.css @@ -237,6 +237,10 @@ a.headerlink { visibility: hidden; } +a:visited { + color: #551A8B; +} + h1:hover > a.headerlink, h2:hover > a.headerlink, h3:hover > a.headerlink, @@ -670,6 +674,16 @@ dd { margin-left: 30px; } +.sig dd { + margin-top: 0px; + margin-bottom: 0px; +} + +.sig dl { + margin-top: 0px; + margin-bottom: 0px; +} + dl > dd:last-child, dl > dd:last-child > :last-child { margin-bottom: 0; @@ -738,6 +752,14 @@ abbr, acronym { cursor: help; } +.translated { + background-color: rgba(207, 255, 207, 0.2) +} + +.untranslated { + background-color: rgba(255, 207, 207, 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100644 --- a/_build/html/_static/documentation_options.js +++ b/_build/html/_static/documentation_options.js @@ -1,5 +1,4 @@ -var DOCUMENTATION_OPTIONS = { - URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), +const DOCUMENTATION_OPTIONS = { VERSION: '', LANGUAGE: 'en', COLLAPSE_INDEX: false, diff --git a/_build/html/_static/pygments.css b/_build/html/_static/pygments.css index 08bec68..84ab303 100644 --- a/_build/html/_static/pygments.css +++ b/_build/html/_static/pygments.css @@ -17,6 +17,7 @@ span.linenos.special { color: #000000; background-color: #ffffc0; padding-left: .highlight .cs { color: #3D7B7B; font-style: italic } /* Comment.Special */ .highlight .gd { color: #A00000 } /* Generic.Deleted */ .highlight .ge { font-style: italic } /* Generic.Emph */ +.highlight .ges { font-weight: bold; font-style: italic } /* Generic.EmphStrong */ .highlight .gr { color: #E40000 } /* Generic.Error */ .highlight .gh { color: #000080; font-weight: bold } /* Generic.Heading */ .highlight .gi { color: #008400 } /* Generic.Inserted */ diff --git a/_build/html/_static/searchtools.js b/_build/html/_static/searchtools.js index 97d56a7..7918c3f 100644 --- a/_build/html/_static/searchtools.js +++ b/_build/html/_static/searchtools.js @@ -57,12 +57,12 @@ const _removeChildren = (element) => { const _escapeRegExp = (string) => string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string -const _displayItem = (item, searchTerms) => { +const _displayItem = (item, searchTerms, highlightTerms) => { const docBuilder = DOCUMENTATION_OPTIONS.BUILDER; - const docUrlRoot = DOCUMENTATION_OPTIONS.URL_ROOT; const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX; const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX; const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY; + const contentRoot = document.documentElement.dataset.content_root; const [docName, title, anchor, descr, score, _filename] = item; @@ -75,20 +75,24 @@ const _displayItem = (item, searchTerms) => { if (dirname.match(/\/index\/$/)) dirname = dirname.substring(0, dirname.length - 6); else if (dirname === "index/") dirname = ""; - requestUrl = docUrlRoot + dirname; + requestUrl = contentRoot + dirname; linkUrl = requestUrl; } else { // normal html builders - requestUrl = docUrlRoot + docName + docFileSuffix; + requestUrl = contentRoot + docName + docFileSuffix; linkUrl = docName + docLinkSuffix; } let linkEl = listItem.appendChild(document.createElement("a")); linkEl.href = linkUrl + anchor; linkEl.dataset.score = score; linkEl.innerHTML = title; - if (descr) + if (descr) { listItem.appendChild(document.createElement("span")).innerHTML = " (" + descr + ")"; + // highlight search terms in the description + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + } else if (showSearchSummary) fetch(requestUrl) .then((responseData) => responseData.text()) @@ -97,6 +101,9 @@ const _displayItem = (item, searchTerms) => { listItem.appendChild( Search.makeSearchSummary(data, searchTerms) ); + // highlight search terms in the summary + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); }); Search.output.appendChild(listItem); }; @@ -115,14 +122,15 @@ const _finishSearch = (resultCount) => { const _displayNextItem = ( results, resultCount, - searchTerms + searchTerms, + highlightTerms, ) => { // results left, load the summary and display it // this is intended to be dynamic (don't sub resultsCount) if (results.length) { - _displayItem(results.pop(), searchTerms); + _displayItem(results.pop(), searchTerms, highlightTerms); setTimeout( - () => _displayNextItem(results, resultCount, searchTerms), + () => _displayNextItem(results, resultCount, searchTerms, highlightTerms), 5 ); } @@ -360,7 +368,7 @@ const Search = { // console.info("search results:", Search.lastresults); // print the results - _displayNextItem(results, results.length, searchTerms); + _displayNextItem(results, results.length, searchTerms, highlightTerms); }, /** diff --git a/_build/html/_static/sphinx_highlight.js b/_build/html/_static/sphinx_highlight.js index aae669d..8a96c69 100644 --- a/_build/html/_static/sphinx_highlight.js +++ b/_build/html/_static/sphinx_highlight.js @@ -29,14 +29,19 @@ const _highlight = (node, addItems, text, className) => { } span.appendChild(document.createTextNode(val.substr(pos, text.length))); + const rest = document.createTextNode(val.substr(pos + text.length)); parent.insertBefore( span, parent.insertBefore( - document.createTextNode(val.substr(pos + text.length)), + rest, node.nextSibling ) ); node.nodeValue = val.substr(0, pos); + /* There may be more occurrences of search term in this node. So call this + * function recursively on the remaining fragment. + */ + _highlight(rest, addItems, text, className); if (isInSVG) { const rect = document.createElementNS( @@ -140,5 +145,10 @@ const SphinxHighlight = { }, }; -_ready(SphinxHighlight.highlightSearchWords); -_ready(SphinxHighlight.initEscapeListener); +_ready(() => { + /* Do not call highlightSearchWords() when we are on the search page. + * It will highlight words from the *previous* search query. + */ + if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords(); + SphinxHighlight.initEscapeListener(); +}); diff --git a/_build/html/genindex.html b/_build/html/genindex.html index 45fdecc..c917d1d 100644 --- a/_build/html/genindex.html +++ b/_build/html/genindex.html @@ -10,11 +10,11 @@ - - - - - + + + + + diff --git a/_build/html/index.html b/_build/html/index.html index 97f7632..c96f3f1 100644 --- a/_build/html/index.html +++ b/_build/html/index.html @@ -11,11 +11,11 @@ - - - - - + + + + + @@ -73,7 +73,7 @@
-

Welcome to NSLS-II SRX’s documentation!

+

Welcome to NSLS-II SRX’s documentation!

Contents:

    @@ -84,7 +84,7 @@

    Welcome to NSLS-II SRX’s documentation! -

    Indices and tables

    +

    Indices and tables

    • Index

    • Module Index

      • diff --git a/_build/html/intro.html b/_build/html/intro.html index 1dc18fd..0b6f5f3 100644 --- a/_build/html/intro.html +++ b/_build/html/intro.html @@ -11,11 +11,11 @@ - - - - - + + + + + @@ -74,12 +74,12 @@
      -

      Introduction to SRX

      +

      Introduction to SRX

      The Sub-micron Resolution X-ray Spectroscopy (SRX) beamline at the NSLS-II supports a wide variety of scientific use-cases, ranging from geoscience through energy materials. Facilities include state-of-the-art, sub-micron focusing X-ray optics and a flexible sample environment.

      _images/SRX_BeamlineSchematic_text_tab_web.png
      -

      A schematic of the SRX beamline at the NSLS-II.

      +

      A schematic of the SRX beamline at the NSLS-II.

      diff --git a/_build/html/search.html b/_build/html/search.html index 28df197..9f510ca 100644 --- a/_build/html/search.html +++ b/_build/html/search.html @@ -11,11 +11,11 @@ - - - - - + + + + + diff --git a/_build/html/searchindex.js b/_build/html/searchindex.js index bad4d8f..3e30f10 100644 --- a/_build/html/searchindex.js +++ b/_build/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["index", "intro", "staff", "useful"], "filenames": ["index.rst", "intro.rst", "staff.rst", "useful.rst"], "titles": ["Welcome to NSLS-II SRX\u2019s documentation!", "Introduction to SRX", "Beamline Staff Pages [staff only]", "Useful Commands"], "terms": {"introduct": 0, "us": [0, 1, 2], "command": 0, "beamlin": [0, 1, 3], "staff": 0, "page": 0, "onli": 0, "index": 0, "modul": 0, "search": [0, 3], "The": [1, 2, 3], "sub": [1, 2], "micron": 1, "resolut": [1, 3], "x": [1, 2, 3], "rai": [1, 2, 3], "spectroscopi": 1, "nsl": [1, 2], "ii": [1, 2], "support": 1, "wide": [1, 2], "varieti": 1, 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SRX\u2019s documentation!": [[0, "welcome-to-nsls-ii-srx-s-documentation"]], "Contents:": [[0, null]], "Indices and tables": [[0, "indices-and-tables"]], "Introduction to SRX": [[1, "introduction-to-srx"]], "Beamline Staff Pages [staff only]": [[2, "beamline-staff-pages-staff-only"]], "Quick Links": [[2, "quick-links"]], "Todo": [[2, "id1"], [2, "id2"], [2, "id3"], [2, "id4"], [2, "id5"], [2, "id6"]], "Setting up Users": [[2, "setting-up-users"]], "Fly-scanning spectroscopy": [[2, "fly-scanning-spectroscopy"]], "CSS-Pages": [[2, "css-pages"]], "Bluesky Commands": [[2, "bluesky-commands"]], "Debugging": [[2, "debugging"]], "Beamline Setup": [[2, "beamline-setup"]], "Preparing for a new cycle": [[2, "preparing-for-a-new-cycle"]], "Aligning the Beamline": [[2, "aligning-the-beamline"]], "Focusing the K-B Mirrors": [[2, "focusing-the-k-b-mirrors"]], "Calibrating the monochromator": [[2, "calibrating-the-monochromator"]], "Beamline Maintenance": [[2, "beamline-maintenance"]], "Cryocooler": [[2, "cryocooler"]], "Warming the cryocooler": [[2, "warming-the-cryocooler"]], "Cooling the cryocooler": [[2, "cooling-the-cryocooler"]], "Controls": [[2, "controls"]], "IOC Monitoring": [[2, "ioc-monitoring"]], "Motion Controls": [[2, "motion-controls"]], "xf05ida-ioc1 motors": [[2, "xf05ida-ioc1-motors"]], "xf05idd-ioc1 motors": [[2, "xf05idd-ioc1-motors"]], "xf05idd-ioc3 motors": [[2, "xf05idd-ioc3-motors"]], "xf05idd-det1": [[2, "xf05idd-det1"]], "xf05idd-det2": [[2, "xf05idd-det2"]], "xf05idd-ioc2": [[2, "xf05idd-ioc2"]], "EPS": [[2, "eps"]], "Useful Commands": [[3, "useful-commands"]], "Starting Bluesky": [[3, "starting-bluesky"]], "General Functions": [[3, "general-functions"]], "XRF Imaging": [[3, "xrf-imaging"]], "XAS Spectroscopy": [[3, "xas-spectroscopy"]], "Metadata": [[3, "metadata"]], "Troubleshooting": [[3, "troubleshooting"]]}, "indexentries": {}}) \ No newline at end of file diff --git a/_build/html/staff.html b/_build/html/staff.html index 3ffead8..eda6b1a 100644 --- a/_build/html/staff.html +++ b/_build/html/staff.html @@ -11,11 +11,11 @@ - - - - - + + + + + @@ -104,10 +104,10 @@
      -

      Beamline Staff Pages [staff only]

      +

      Beamline Staff Pages [staff only]

      The information provided on this page is directed towards helping beamline staff.