python-package-conda.yml

- name: Install dependencies
  run: conda env update --file environment.yml --name base -vvv
- name: Activate Conda environment
  run: |
    echo "source /usr/share/miniconda/etc/profile.d/conda.sh" >> $GITHUB_ENV
    conda activate myenv
name: Python Package using Conda

on: [push]

jobs:
  build-linux:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3

    - name: Setup Conda environment
      uses: conda-incubator/setup-miniconda@v2
      with:
        auto-update-conda: true
        python-version: '3.10'
        environment-file: environment.yml
        activate-environment: myenv
        auto-activate-base: false

    - name: Install Additional Dependencies
      run: |
        conda install flake8 pytest
      shell: bash -l {0}

    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
      shell: bash -l {0}

    - name: Test with pytest
      run: |
        pytest
      shell: bash -l {0}