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Scores with negative correlations/directions #385

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DarioS opened this issue Aug 27, 2024 · 2 comments
Open

Scores with negative correlations/directions #385

DarioS opened this issue Aug 27, 2024 · 2 comments
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@DarioS
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DarioS commented Aug 27, 2024

For example, EFO_0001645. Could this be an automated check during curation?
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@smlmbrt smlmbrt changed the title Opposite Phenotypes Scores with negative correlations/directions Aug 28, 2024
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smlmbrt commented Aug 28, 2024

Hi @DarioS, we don't do this type of QC on the data because we try and faithfully recapitulate the scores as they were reported. In some cases we go back to the authors to double-check if certain scores are flagged by users. There are also some traits (eGFR) where it will be naturally flipped (predicting CKD).

@smlmbrt smlmbrt self-assigned this Aug 28, 2024
@smlmbrt smlmbrt added the question Further information is requested label Aug 28, 2024
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DarioS commented Sep 3, 2024

we go back to the authors to double-check if certain scores are flagged by users

Great, so you will contact the authors of PGS003727, PGS004237, PGS004888.

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