From 811c21fa0f02173c55218d6322512944cc71369d Mon Sep 17 00:00:00 2001
From: sureshhewa <sureshhewabi@gmail.com>
Date: Fri, 8 Dec 2023 07:45:55 +0000
Subject: [PATCH] rename fix

---
 .env                                |  2 +-
 xi_web_api/models/detailedview.py   | 32 -----------------------------
 xi_web_api/models/proteindetails.py | 17 ---------------
 xi_web_api/models/summary.py        | 10 ---------
 xiview_server/app.py                |  4 ++--
 5 files changed, 3 insertions(+), 62 deletions(-)
 delete mode 100644 xi_web_api/models/detailedview.py
 delete mode 100644 xi_web_api/models/proteindetails.py
 delete mode 100644 xi_web_api/models/summary.py

diff --git a/.env b/.env
index d81ef52..6785c51 100644
--- a/.env
+++ b/.env
@@ -1,3 +1,3 @@
 PYTHONHASHSEED=0
-FLASK_APP="xiview_server/pride_loader.py"
+FLASK_APP="xiview_server/app.py"
 XI2XIVIEWLOADER_SETTINGS=config
\ No newline at end of file
diff --git a/xi_web_api/models/detailedview.py b/xi_web_api/models/detailedview.py
deleted file mode 100644
index 7fb8309..0000000
--- a/xi_web_api/models/detailedview.py
+++ /dev/null
@@ -1,32 +0,0 @@
-from xi_web_api.models.proteindetails import ProteinDetails
-
-
-class DetailedView:
-
-    def __init__(self, accession, title, description, pubmed_id, protein_details):
-        self.accession = accession
-        self.title = title
-        self.description = description
-        self.pubmed_id = pubmed_id
-        self.protein_details = protein_details
-
-    def add_protein_details(self, protein_details):
-        if isinstance(protein_details, ProteinDetails):
-            self.protein_details.append(protein_details)
-        else:
-            print("Invalid protein_details object. Please provide a protein_details instance.")
-
-    def remove_protein_details(self, protein_details):
-        if protein_details in self.protein_details:
-            self.protein_details.remove(protein_details)
-        else:
-            print("Protein details not found in the Detailed View.")
-
-    # def to_dict(self):
-    #     return {
-    #         'accession': self.accession,
-    #         'title': self.title,
-    #         'description': self.description,
-    #         'pubmed_id': self.pubmed_id,
-    #         'protein_details': self.protein_details
-    #     }
\ No newline at end of file
diff --git a/xi_web_api/models/proteindetails.py b/xi_web_api/models/proteindetails.py
deleted file mode 100644
index 9d1e856..0000000
--- a/xi_web_api/models/proteindetails.py
+++ /dev/null
@@ -1,17 +0,0 @@
-class ProteinDetails:
-
-    def __init__(self, proteins, peptides, spectra, cross_linking, pdb):
-        self.proteins = proteins
-        self.peptides = peptides
-        self.spectra = spectra
-        self.cross_linking = cross_linking
-        self.pdb = pdb
-
-    # def to_dict(self):
-    #     return {
-    #         'proteins': self.self.proteins,
-    #         'peptides': self.self.peptides,
-    #         'spectra': self.self.spectra,
-    #         'cross_linking': self.self.cross_linking,
-    #         'pdb': self.self.pdb
-    #     }
diff --git a/xi_web_api/models/summary.py b/xi_web_api/models/summary.py
deleted file mode 100644
index b03bd61..0000000
--- a/xi_web_api/models/summary.py
+++ /dev/null
@@ -1,10 +0,0 @@
-class Summary:
-
-    def __init__(self):
-        self.accession = ""
-        self.title = ""
-        self.pubmed_id = ""
-        self.proteins = 0
-        self.peptides = 0
-        self.spectra = 0
-        self.aggregated_view = ""
diff --git a/xiview_server/app.py b/xiview_server/app.py
index da08bbd..00d1aee 100644
--- a/xiview_server/app.py
+++ b/xiview_server/app.py
@@ -27,8 +27,8 @@ def create_app():
     # add CORS header
     CORS(app)
 
-    from xi2annotator import bp as xi2_bp
-    app.register_blueprint(xi2_bp)
+    # from xi2annotator import bp as xi2_bp
+    # app.register_blueprint(xi2_bp)
 
     @app.route('/network.html', methods=['GET'])
     def network():