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Copy pathERT_AdvancedEditor_v1.361.py
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ERT_AdvancedEditor_v1.361.py
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import math
import pandas as pd
import csv
import pathlib
import wx
import matplotlib
import matplotlib.pylab as pL
import matplotlib.pyplot as plt
import matplotlib.backends.backend_wxagg as wxagg
import re
import numpy as np
import scipy
import scipy.interpolate
import sys
#import wx.lib.inspection as wxli
#This is a wxPython app that helps in analysis of ERT data
#Designed to help clean data exported from Abem Terrameter LS. .Txt outputs prioritized, also works with .dat outputs
class ERTAPP(wx.Frame):
def __init__(self):
wx.Frame.__init__(self, None, wx.ID_ANY, title='ERT Editing',pos=(100,100),size=(500,500))
#Built from template here: https://wiki.wxpython.org/GridSizerTutorial
#Set up Panels
def setUpPanels(self):
self.topPanel = wx.Panel(self, wx.ID_ANY,size = (1000,10),name='Top Panel')
self.infoPanel = wx.Panel(self, wx.ID_ANY,size = (1000,50),name='Info Panel')
self.chartPanel = wx.Panel(self, wx.ID_ANY,size = (1000,500),name='Chart Panel')
self.bottomPanel= wx.Panel(self, wx.ID_ANY,size = (1000,130),name='Bottom Panel')
#Set up Title
def titleSetup(self):
bmp = wx.ArtProvider.GetBitmap(wx.ART_INFORMATION, wx.ART_OTHER, (4, 4))
self.titleIco = wx.StaticBitmap(self.topPanel, wx.ID_ANY, bmp)
self.title = wx.StaticText(self.topPanel, wx.ID_ANY, 'Advanced ERT Editing')
#Declare variables for app
def inputSetup(self):
#Declare variables for inputs
bmp = wx.ArtProvider.GetBitmap(wx.ART_TIP, wx.ART_OTHER, (4, 4))
self.inputOneIco = wx.StaticBitmap(self.topPanel, wx.ID_ANY, bmp)
self.labelOne = wx.StaticText(self.topPanel, wx.ID_ANY, 'Input ERT Data')
self.inputTxtOne = wx.TextCtrl(self.topPanel, wx.ID_ANY, '')
self.inputTxtOne.SetHint('Enter data file path here')
self.inputBrowseBtn = wx.Button(self.topPanel, wx.ID_ANY, 'Browse')
self.Bind(wx.EVT_BUTTON, self.onBrowse, self.inputBrowseBtn)
self.readInFileBtn = wx.Button(self.topPanel, wx.ID_ANY, 'Read Data')
self.Bind(wx.EVT_BUTTON, self.onReadIn, self.readInFileBtn)
self.inputDataType = wx.Choice(self.topPanel, id=wx.ID_ANY,choices=['.DAT (LS)','.TXT (LS)','.DAT (SAS)', '.VTK', '.XYZ'],name='.TXT (LS)')
self.Bind(wx.EVT_CHOICE,self.onDataType,self.inputDataType)
self.autoShiftBx = wx.CheckBox(self.topPanel,wx.ID_ANY, 'Auto Shift?')
self.autoShiftBx.SetValue(True)
#Declare variables for information panel
self.TxtProfileName = wx.StaticText(self.infoPanel, wx.ID_ANY, 'Profile Name: ')
self.TxtProfileRange = wx.StaticText(self.infoPanel, wx.ID_ANY, 'Profile Length: ')
self.TxtDataPts = wx.StaticText(self.infoPanel, wx.ID_ANY, 'Data Points: ')
self.TxtBlank = wx.StaticText(self.infoPanel, wx.ID_ANY, '')
self.TxtBlank2 = wx.StaticText(self.infoPanel, wx.ID_ANY, '')
self.TxtMinElectSpcng = wx.StaticText(self.infoPanel, wx.ID_ANY, 'Min. Electrode Spacing: ')
self.TxtProjectName = wx.StaticText(self.infoPanel, wx.ID_ANY, 'Project Name: ')
self.TxtArray = wx.StaticText(self.infoPanel, wx.ID_ANY, 'Array: ')
self.msgProfileName = wx.StaticText(self.infoPanel, wx.ID_ANY, '')
self.msgProfileRange = wx.StaticText(self.infoPanel, wx.ID_ANY, '')
self.msgDataPts = wx.StaticText(self.infoPanel, wx.ID_ANY, '')
self.msgMinElectSpcng = wx.StaticText(self.infoPanel, wx.ID_ANY, '')
self.msgProjectName = wx.StaticText(self.infoPanel, wx.ID_ANY, '')
self.msgArray = wx.StaticText(self.infoPanel, wx.ID_ANY, '')
# Declare variables for DataViz Area item(s) and chart panel
def dataVizSetup(self):
self.editSlider = wx.Slider(self.chartPanel, pos=(200,0), id=wx.ID_ANY, style=wx.SL_TOP | wx.SL_AUTOTICKS | wx.SL_LABELS, name='Edit Data')
self.Bind(wx.EVT_SCROLL, self.onSliderEditEVENT, self.editSlider)
self.dataVizMsg1 = wx.StaticText(self.chartPanel, wx.ID_ANY, '')
self.dataVizMsg2 = wx.StaticText(self.chartPanel, wx.ID_ANY, '')
self.dataVizInput = wx.TextCtrl(self.chartPanel, wx.ID_ANY, '')
self.dataVizInputBtn = wx.Button(self.chartPanel, -1, "Use Value")
self.dataVizInputBtn.Bind(wx.EVT_BUTTON, self.ONdataVizInput)
self.saveEditsBtn = wx.Button(self.chartPanel, -1, "Save Edits")
self.saveEditsBtn.Bind(wx.EVT_BUTTON, self.ONSaveEdits)
self.saveEditsBtn.SetBackgroundColour((100,175,100))
self.currentChart = 'Graph'
self.editDataChoiceList = ['AppResist','Resistance','Electrode x-Dists','Variance','PctErr','PseudoX','PseudoZ']
self.editDataChoiceBool = [False]*len(self.editDataChoiceList)
self.editDataValues = []
for i in self.editDataChoiceList:
self.editDataValues.append([0,0])
self.editDataType = wx.Choice(self.chartPanel, id=wx.ID_ANY,choices=self.editDataChoiceList,name='Edit Data')
self.editDataType.Bind(wx.EVT_CHOICE, self.onSelectEditDataType)
self.setEditToggleBtn = wx.ToggleButton(self.chartPanel,wx.ID_ANY,'Unused',size=(25,30))
self.setEditToggleBtn.Bind(wx.EVT_TOGGLEBUTTON, self.onSetEditToggle)
self.labelMinRem = wx.StaticText(self.chartPanel, wx.ID_ANY, 'Min.')
self.inputTxtMinRem = wx.TextCtrl(self.chartPanel, wx.ID_ANY,style=wx.TE_PROCESS_ENTER, name='')
self.inputTxtMinRem.Bind(wx.EVT_TEXT_ENTER, self.onEditDataValueChangeEvent)
self.labelMaxRem = wx.StaticText(self.chartPanel, wx.ID_ANY,'Max.')
self.inputTxtMaxRem = wx.TextCtrl(self.chartPanel, wx.ID_ANY,style=wx.TE_PROCESS_ENTER,name= '')
self.inputTxtMaxRem.Bind(wx.EVT_TEXT_ENTER, self.onEditDataValueChangeEvent)
self.editTypeToggleBtn = wx.ToggleButton(self.chartPanel,wx.ID_ANY,'Remove',size=(25,50))
self.editTypeToggleBtn.Bind(wx.EVT_TOGGLEBUTTON, self.onEditTypeToggle)
self.editLogicToggleBtn = wx.ToggleButton(self.chartPanel,wx.ID_ANY,'OR',size=(25,25))
self.editLogicToggleBtn.Bind(wx.EVT_TOGGLEBUTTON, self.onLogicToggle)
self.removePtsBtn = wx.Button(self.chartPanel, -1, "Edit Points")
self.removePtsBtn.Bind(wx.EVT_BUTTON, self.onRemovePts)
self.electrodeToggleBtn = wx.ToggleButton(self.chartPanel,wx.ID_ANY,'On',size=(25,25))
self.electrodeToggleBtn.Bind(wx.EVT_TOGGLEBUTTON, self.ONtoggle)
self.GraphEditBtn = wx.Button(self.chartPanel, -1, "Graphic Editor", size=(100, 30))
self.GraphEditBtn.Bind(wx.EVT_BUTTON, self.graphChartEvent)
self.StatEditBtn = wx.Button(self.chartPanel, -1, "Statistical Editor", size=(100, 30))
self.Bind(wx.EVT_BUTTON, self.statChartEvent, self.StatEditBtn)
self.addGPSBtn = wx.Button(self.chartPanel, -1, "GPS Data", size=(100, 30))
self.addGPSBtn.Bind(wx.EVT_BUTTON, self.GPSChartEvent)
self.addTopoBtn = wx.Button(self.chartPanel, -1, "Topography Data", size=(100, 30))
self.addTopoBtn.Bind(wx.EVT_BUTTON, self.topoChartEvent)
self.reviewBtn = wx.Button(self.chartPanel, -1, "Review Edits", size=(100, 15))
self.reviewBtn.Bind(wx.EVT_BUTTON, self.reviewEvent)
#Declare variables for output/export area
def bottomAreaSetup(self):
self.reverseBx = wx.CheckBox(self.bottomPanel,wx.ID_ANY, 'Reverse Profile')
self.labelGPSIN = wx.StaticText(self.bottomPanel, wx.ID_ANY, 'GPS Data')
self.inputTxtGPS = wx.TextCtrl(self.bottomPanel, wx.ID_ANY, 'Enter GPS Filepath Here')
self.inputGPSBtn = wx.Button(self.bottomPanel, wx.ID_ANY, 'Browse')
self.Bind(wx.EVT_BUTTON, self.onGPSBrowse, self.inputGPSBtn)
self.Bind(wx.EVT_CHECKBOX, self.onReverse, self.reverseBx)
self.dataEditMsg = wx.StaticText(self.bottomPanel, wx.ID_ANY, '')
self.labelTopoIN = wx.StaticText(self.bottomPanel, wx.ID_ANY, 'Topo Data')
self.inputTxtTopo = wx.TextCtrl(self.bottomPanel, wx.ID_ANY, 'Enter Topo Filepath Here')
self.inputTopoBtn = wx.Button(self.bottomPanel, wx.ID_ANY, 'Browse')
self.includeTopoBx = wx.CheckBox(self.bottomPanel,wx.ID_ANY, 'Include Topography')
self.Bind(wx.EVT_BUTTON, self.onTopoBrowse, self.inputTopoBtn)
self.Bind(wx.EVT_CHECKBOX, self.onIncludeTopo, self.includeTopoBx)
self.saveBtn = wx.Button(self.bottomPanel, wx.ID_ANY, 'Export and Save Data')
self.cancelBtn = wx.Button(self.bottomPanel, wx.ID_ANY, 'Cancel')
self.Bind(wx.EVT_BUTTON, self.onExport, self.saveBtn)
self.Bind(wx.EVT_BUTTON, self.onCancel, self.cancelBtn)
self.labelExport = wx.StaticText(self.bottomPanel, wx.ID_ANY, 'Export Data')
self.exportTXT = wx.TextCtrl(self.bottomPanel, wx.ID_ANY, 'Enter Export Filepath Here')
self.exportDataBtn = wx.Button(self.bottomPanel, wx.ID_ANY, 'Browse')
self.Bind(wx.EVT_BUTTON, self.onExportBrowse, self.exportDataBtn)
#Set up chart
def chartSetup(self):
self.chartSizer = wx.BoxSizer(wx.VERTICAL)
self.figure = matplotlib.figure.Figure()
self.canvas = wxagg.FigureCanvasWxAgg(self.chartPanel, -1, self.figure)
self.axes = self.figure.add_subplot(111)
self.axes.set_xlabel('X-Distance (m)')
self.axes.set_ylabel('Depth (m)')
self.toolbar = wxagg.NavigationToolbar2WxAgg(self.canvas)
#Set up sizers that items will be placed inside
def sizersSetup(self):
#Set up sizers
self.baseSizer = wx.BoxSizer(wx.VERTICAL)
self.topSizer = wx.BoxSizer(wx.VERTICAL)
self.titleSizer = wx.BoxSizer(wx.HORIZONTAL)
self.inputSizer = wx.BoxSizer(wx.HORIZONTAL)
#self.readMsgSizer = wx.BoxSizer(wx.HORIZONTAL)
self.profileInfoSizer = wx.BoxSizer(wx.HORIZONTAL)
self.profileTxtSizer1 = wx.BoxSizer(wx.VERTICAL)
self.profileTxtSizer2 = wx.BoxSizer(wx.VERTICAL)
self.profileMsgSizer1 = wx.BoxSizer(wx.VERTICAL)
self.profileMsgSizer2 = wx.BoxSizer(wx.VERTICAL)
self.profileInfoSizer = wx.BoxSizer(wx.HORIZONTAL)
self.ctrlSizer = wx.BoxSizer(wx.VERTICAL)
self.chartSizer = wx.BoxSizer(wx.VERTICAL)
self.dataVizSizer = wx.BoxSizer(wx.HORIZONTAL)
self.vizInfoSizer = wx.BoxSizer(wx.HORIZONTAL)
self.dataEditSizer = wx.BoxSizer(wx.HORIZONTAL)
self.bottomSizer = wx.BoxSizer(wx.VERTICAL)
self.GPSSizer = wx.BoxSizer(wx.HORIZONTAL)
self.TopoSizer = wx.BoxSizer(wx.HORIZONTAL)
self.botSizer = wx.BoxSizer(wx.HORIZONTAL)
#Add items to sizers
def addtoSizers(self):
self.titleSizer.Add(self.title, 0, wx.ALIGN_CENTER)
self.inputSizer.Add(self.labelOne, 1,wx.ALIGN_CENTER,5)
self.inputSizer.Add(self.inputTxtOne, 8,wx.EXPAND,5)
self.inputSizer.Add(self.inputBrowseBtn,1,wx.ALIGN_CENTER,5)
self.inputSizer.Add(self.inputDataType,1,wx.ALIGN_CENTER,5)
self.inputSizer.Add(self.readInFileBtn,1,wx.ALIGN_CENTER,5)
self.inputSizer.Add(self.autoShiftBx, 1, wx.ALIGN_CENTER, 5)
#self.readMsgSizer.Add(self.msgLabelOne, 0, wx.ALL,5)
self.profileTxtSizer1.Add(self.TxtProfileName, 0, wx.ALIGN_LEFT,5)
self.profileTxtSizer1.Add(self.TxtProfileRange, 0, wx.ALIGN_LEFT,5)
self.profileTxtSizer1.Add(self.TxtDataPts, 0, wx.ALIGN_LEFT,5)
self.profileTxtSizer2.Add(self.TxtMinElectSpcng, 0, wx.ALIGN_LEFT,5)
self.profileTxtSizer2.Add(self.TxtArray, 0, wx.ALIGN_LEFT,5)
self.profileTxtSizer2.Add(self.TxtProjectName, 0, wx.ALIGN_LEFT,5)
self.profileMsgSizer1.Add(self.msgProfileName, 0, wx.ALIGN_LEFT,5)
self.profileMsgSizer1.Add(self.msgProfileRange, 0, wx.ALIGN_LEFT,5)
self.profileMsgSizer1.Add(self.msgDataPts, 0, wx.ALIGN_LEFT,5)
self.profileMsgSizer2.Add(self.msgMinElectSpcng, 0, wx.ALIGN_LEFT,5)
self.profileMsgSizer2.Add(self.msgArray, 0, wx.ALIGN_LEFT,5)
self.profileMsgSizer2.Add(self.msgProjectName, 0, wx.ALIGN_LEFT,5)
self.profileInfoSizer.Add(self.profileTxtSizer1, 1,wx.ALL,5)
self.profileInfoSizer.Add(self.profileMsgSizer1,3,wx.ALL,5)
self.profileInfoSizer.Add(self.profileTxtSizer2, 1, wx.ALL, 5)
self.profileInfoSizer.Add(self.profileMsgSizer2, 3, wx.ALL, 5)
self.topSizer.Add(self.titleSizer,1,wx.ALL,5)
self.topSizer.Add(self.inputSizer, 2, wx.ALL, 5)
#self.topSizer.Add(self.readMsgSizer, 1, wx.ALL, 5)
self.vizInfoSizer.Add(self.dataVizMsg1,16,wx.ALL,5)
self.vizInfoSizer.Add(self.dataVizMsg2, 24, wx.ALL, 5)
self.vizInfoSizer.Add(self.electrodeToggleBtn,1,wx.ALL,5)
self.vizInfoSizer.Add(self.dataVizInput, 1, wx.ALL, 5)
self.vizInfoSizer.Add(self.dataVizInputBtn,3,wx.ALL,5)
self.vizInfoSizer.Add(self.saveEditsBtn,3,wx.ALL,5)
self.ctrlSizer.Add(self.GraphEditBtn, 2, wx.ALL, 5)
self.ctrlSizer.Add(self.StatEditBtn, 2, wx.ALL, 5)
self.ctrlSizer.Add(self.addGPSBtn, 2, wx.ALL, 5)
self.ctrlSizer.Add(self.addTopoBtn, 2, wx.ALL, 5)
self.ctrlSizer.Add(self.reviewBtn,1,wx.ALL,5)
self.dataEditSizer.Add(self.editDataType,5, wx.ALL, 5)
self.dataEditSizer.Add(self.setEditToggleBtn,2,wx.ALL,5)
self.dataEditSizer.Add(self.labelMinRem, 2, wx.ALL, 5)
self.dataEditSizer.Add(self.inputTxtMinRem, 3, wx.ALL, 5)
self.dataEditSizer.Add(self.inputTxtMaxRem, 3, wx.ALL, 5)
self.dataEditSizer.Add(self.labelMaxRem, 2, wx.ALL, 5)
self.dataEditSizer.Add(self.editTypeToggleBtn,3,wx.ALL,5)
self.dataEditSizer.Add(self.editLogicToggleBtn,2,wx.ALL,5)
self.dataEditSizer.Add(self.removePtsBtn, 3, wx.ALL, 5)
self.chartSizer.Add(self.vizInfoSizer, 1, wx.ALL, 5)
self.chartSizer.Add(self.editSlider,1, wx.LEFT | wx.RIGHT | wx.EXPAND,94)
self.chartSizer.Add(self.canvas, 12, wx.EXPAND)
self.chartSizer.Add(self.toolbar, 1, wx.EXPAND)
self.chartSizer.Add(self.dataEditSizer,1,wx.EXPAND)
self.dataVizSizer.Add(self.ctrlSizer,1,wx.EXPAND)
self.dataVizSizer.Add(self.chartSizer,6,wx.EXPAND)
self.GPSSizer.Add(self.dataEditMsg, 2, wx.ALL, 5)
self.GPSSizer.Add(self.reverseBx, 1, wx.ALL, 5)
self.GPSSizer.Add(self.labelGPSIN, 1, wx.ALIGN_CENTER_VERTICAL | wx.ALL, 5)
self.GPSSizer.Add(self.inputTxtGPS, 8, wx.ALIGN_CENTER_VERTICAL | wx.ALL, 5)
self.GPSSizer.Add(self.inputGPSBtn, 1, wx.ALIGN_CENTER_VERTICAL | wx.ALL, 5)
self.TopoSizer.Add(self.includeTopoBx, 2, wx.ALIGN_CENTER_VERTICAL | wx.ALL, 5)
self.TopoSizer.Add(self.labelTopoIN, 1, wx.ALIGN_CENTER_VERTICAL| wx.ALL, 5)
self.TopoSizer.Add(self.inputTxtTopo, 8, wx.ALIGN_CENTER_VERTICAL| wx.ALL, 5)
self.TopoSizer.Add(self.inputTopoBtn, 1, wx.ALIGN_CENTER_VERTICAL| wx.ALL, 5)
self.botSizer.Add(self.labelExport, 1, wx.ALL, 5)
self.botSizer.Add(self.exportTXT,6, wx.ALL, 5)
self.botSizer.Add(self.exportDataBtn,1, wx.ALL, 5)
self.botSizer.Add(self.cancelBtn, 1, wx.ALL, 5)
self.botSizer.Add(self.saveBtn, 1, wx.ALL, 5)
#btnSizer.Add(saveEditsBtn,0,wx.ALL,5)
self.bottomSizer.Add(self.GPSSizer,0, wx.ALIGN_RIGHT | wx.ALL, 5)
self.bottomSizer.Add(self.TopoSizer,0, wx.ALIGN_RIGHT | wx.ALL, 5)
self.bottomSizer.Add(self.botSizer,0, wx.ALIGN_RIGHT | wx.ALL, 5)
#Add sizers to panels
def addtoPanels(self):
self.topPanel.SetSizer(self.topSizer)
self.infoPanel.SetSizer(self.profileInfoSizer)
self.chartPanel.SetSizer(self.dataVizSizer)
self.bottomPanel.SetSizer(self.bottomSizer)
self.topPanel.Layout()
#Add panels to main sizer
self.baseSizer.Add(self.topPanel,1, wx.EXPAND,1)
self.baseSizer.Add(self.infoPanel,1,wx.EXPAND,1)
self.baseSizer.Add(self.chartPanel, 10, wx.EXPAND | wx.ALL, 5)
self.baseSizer.Add(self.bottomPanel, 1, wx.EXPAND | wx.ALL, 1)
self.SetSizer(self.baseSizer)
self.SetSize(1100,950)
#This section is only for book-keeping; helps define what the "global" variables are
def variableInfo(): #To see what the 'global' variables are
pass
#self.electxDataIN: list of all electrode xdistances
#self.xCols: list with numbers of columns with x-values, from initial read-in table. varies with datatype
#self.xData: list with all x-values of data points
#self.zData: list with all z-values of data points (depth)
#self.values: list with all resist. values of data points
#self.inputDataExt: extension of file read in, selected from initial drop-down (default = .dat (LS))
#self.xDF : dataframe with only x-dist of electrodes, and all of them
#self.dataHeaders: headers from original file read in, used for column names for dataframeIN
#self.dataListIN: nested list that will be used to create dataframe, with all read-in data
#self.dataframeIN: initial dataframe from data that is read in
#self.df: dataframe formatted for editing, but remaining static as initial input data
#self.dataframeEDIT: dataframe that is manipulated during editing
#self.electrodes: sorted list of all electrode xdistances
#self.electrodesAllShifted: shifted, sorted list of all electrode xdistances
#self.electState:list of booleans giving status of electrode (True = in use, False = edited out)
#self.electrodeElevs: surface elevation values at each electrode
#self.dataLengthIN: number of measurements in file/length of dataframes
#self.dataframeEDITColHeaders
#self.dataShifted: indicates whether data has been shifted
#These next lines run all the set up functions that were defined above ^
setUpPanels(self)
titleSetup(self)
inputSetup(self)
dataVizSetup(self)
bottomAreaSetup(self)
chartSetup(self)
sizersSetup(self)
addtoSizers(self)
addtoPanels(self)
#wxli.InspectionTool().Show(self)
#Functions that run as user interacts with app
#exists as placeholder when functions are added
def nullFunction(self,event):
pass
#Initial tasks when file is selected (but not yet imported)
def onBrowse(self,event):
with wx.FileDialog(self,"Open Data File", style= wx.FD_OPEN | wx.FD_FILE_MUST_EXIST) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return
self.dataPath = pathlib.Path(fileDialog.GetPath())
fName = str(self.dataPath.parent) + '\\' + self.dataPath.name
self.inputDataExt = self.dataPath.suffix
try:
with open(self.dataPath,'r') as datafile:
self.inputTxtOne.SetValue(fName)
except IOError:
wx.LogError("Cannot Open File")
if self.inputDataExt.lower() == '.txt':
self.inputDataExt = '.TXT (LS)'
n = 1
elif self.inputDataExt.lower() == '.dat':
if self.dataPath.stem.startswith('lr'):
self.inputDataExt = '.DAT (SAS)'
n = 2
else:
self.inputDataExt = '.DAT (LS)'
n = 0
elif self.inputDataExt.lower() == '.vtk':
self.inputDataExt = '.VTK'
n=3
elif self.inputDataExt.lower() == '.xyz':
self.inputDataExt = '.XYZ'
n=4
else:
wx.LogError("Cannot Open File")
if self.inputDataExt == '.DAT (LS)' or self.inputDataExt == '.TXT (LS)':
outPath = self.dataPath.stem.split('-')[0]
else:
outPath = self.dataPath.stem.split('.')[0]
if outPath.startswith('lr'):
outPath = outPath[2:]
outPath = outPath +'_pyEdit.dat'
if self.includeTopoBx.GetValue():
outPath = outPath[:-4]
outPath = outPath + "_topo.dat"
self.exportTXT.SetValue(str(self.dataPath.with_name(outPath)))
self.inputDataType.SetSelection(n)
self.readInFileBtn.SetLabelText('Read Data')
#Initial tasks that run when GPS file is selected (but not yet imported)
def onGPSBrowse(self,event):
with wx.FileDialog(self,"Open GPS File", style= wx.FD_OPEN | wx.FD_FILE_MUST_EXIST) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return
self.GPSpath = pathlib.Path(fileDialog.GetPath())
gpsFName = str(self.GPSpath.parent) + '\\' + self.GPSpath.name
self.inputTxtGPS.SetValue(gpsFName)
self.getGPSVals()
#Tasks that run when GPS is imported
def getGPSVals(self):
with open(self.GPSpath) as GPSFile:
data = csv.reader(GPSFile)
self.gpsXData = []
self.gpsYData = []
self.gpsLabels = []
for row in enumerate(data):
if row[0] == 0:
pass #headerline
else:
r = re.split('\t+', str(row[1][0]))
if row[0] == '':
pass
else:
self.gpsLabels.append(r[2])
self.gpsXData.append(float(r[3]))
self.gpsYData.append(float(r[4]))
#Tasks that run when Topo file is selected (but not yet imported)
def onTopoBrowse(self,event):
with wx.FileDialog(self,"Open Topo File", style= wx.FD_OPEN | wx.FD_FILE_MUST_EXIST) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return
self.topoPath = pathlib.Path(fileDialog.GetPath())
topoFName = str(self.topoPath.parent) + '\\' + self.topoPath.name
self.inputTxtTopo.SetValue(topoFName)
self.includeTopoBx.SetValue(True)
self.getTopoVals()
self.topoText()
#Event function that ties to next function
def onIncludeTopo(self,event):
self.topoText()
#Function that looks at output text and appends "_topo" to output filename automatically if needed
def topoText(self):
if self.includeTopoBx.GetValue() == True:
#print('topo' not in self.exportTXT.GetValue())
if 'topo' not in self.exportTXT.GetValue():
#print("It's Not in")
if len(self.exportTXT.GetValue())>0:
outPath = self.exportTXT.GetValue()
outPath = outPath[:int(len(outPath)-4)]
outPath = outPath + "_topo.dat"
self.exportTXT.SetValue(outPath)
elif self.includeTopoBx.GetValue() == False:
if '_topo' in self.exportTXT.GetValue():
outPath = self.exportTXT.GetValue()
#print(outPath)
strInd = int(outPath.find("_topo"))
strInd2 = strInd + 5
outPath = outPath[:strInd]+outPath[strInd2:]
self.exportTXT.SetValue(outPath)
#Event function that captures event and runs another, simpler function
def onReverse(self,event):
self.reverseText()
#Function that looks at output text and appends "_rev" to output filename automatically if needed
def reverseText(self):
if self.reverseBx.GetValue() == True:
if '_rev' not in self.exportTXT.GetValue():
if len(self.exportTXT.GetValue())>0:
outPath = self.exportTXT.GetValue()
outPath = outPath[:int(len(outPath)-4)]
outPath = outPath + "_rev.dat"
self.exportTXT.SetValue(outPath)
elif self.reverseBx.GetValue() == False:
if '_rev' in self.exportTXT.GetValue():
outPath = self.exportTXT.GetValue()
#print(outPath)
strInd = int(outPath.find("_rev"))
strInd2 = strInd + 4
outPath = outPath[:strInd]+outPath[strInd2:]
self.exportTXT.SetValue(outPath)
#Function that pulls topo values out of topo file
def getTopoVals(self):
with open(self.topoPath) as topoFile:
data = csv.reader(topoFile)
topoXData = []
topoYData = []
topoLabels = []
for row in enumerate(data):
if row[0] == 0:
pass
else:
r = re.split('\t+', str(row[1][0]))
if r[0] == '':
pass
else:
topoLabels.append(r[0])
topoXData.append(float(r[1]))
topoYData.append(float(r[2]))
self.topoDF = pd.DataFrame([topoXData, topoYData]).transpose()
self.topoDF.columns = ["xDist", "Elev"]
#function that sets up parameters based on what data type is selected for input data file
def onDataType(self,event):
self.inputDataExt = self.inputDataType.GetString(self.inputDataType.GetSelection())
if self.inputDataExt == '.DAT (LS)':
self.headerlines = 8
elif self.inputDataExt == '.DAT (SAS)':
self.headerlines = 5
elif self.inputDataExt == '.VTK':
self.headerlines = 5 #!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
elif self.inputDataExt == '.XYZ':
self.header = 5 #!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
elif self.inputDataExt =='':
self.headerlines = 8
else:
if len(self.inputTxtOne.GetValue()) > 0:
try:
with open(self.dataPath, 'r') as datafile:
filereader = csv.reader(datafile)
start = 0
for row in enumerate(filereader):
if start == 0:
if 'N\\tTime' in str(row[1]):
start = 1
self.headerlines = row[0]
else:
continue
else:
continue
except:
self.headerlines = -1
wx.LogError('Data File not selected')
else:
self.headerlines = -1
#Tasks that run upon user clicking "Read Data" Button
def onReadIn(self, event):
self.onDataType(self) #initialize number of headerlines to use
self.dataHeaders = []
filepath = pathlib.Path(self.inputTxtOne.GetValue())
self.inputDataExt = str(filepath.suffix)
filename = str(filepath.stem)
self.dataframeEDITColHeaders = ['MeasID','A(x)','A(z)','B(x)','B(z)','M(x)','M(z)','N(x)','N(z)', 'aVal', 'nFac','PseudoX','PseudoZ','Resistance','AppResist','Cycles','Variance','DataLevel','DtLvlMean','PctErr','Keep']
if self.inputDataExt.lower() == '.dat':
###############Need to update to fit .txt data format
dataLst = []
self.dataLead = []
self.dataTail = []
with open(filepath) as dataFile:
data = csv.reader(dataFile)
if self.inputDataExt == '.DAT (SAS)':
self.dataHeaders = ['M(x)','aVal','nFac','AppResist']
i = 0
dataList=[]
for row in enumerate(data):
if row[0]>self.headerlines: #Read in actual data
if row[0] > self.headerlines + datalength: #Read in data tail
self.dataTail.append(row[1])
else:
#It sometimes reads the lines differently. Sometimes as a list (as it should) other times as a long string
if len(row[1]) < 4:
#Entire row is read as string
dataList.append(re.split(' +', row[1][0]))
else:
#Row is read correctly as separate columns
dataList.append(row[1])
i+=1
else:
if row[0] == 3: #Read in data length
datalength = float(row[1][0])
self.dataLead.append(row[1])#Create data lead variable for later use
datalengthIN = i
self.fileHeaderDict = {}
self.dataListIN = dataList #Formatted global nested list is created of data read in
project = self.dataLead[0][0]
array = self.dataLead[2][0]
if float(array) == 3:
array = "Dipole-Dipole"
msrmtType = 'Apparent Resistivity'
self.fileHeaderDict['Filename'] = filename
self.fileHeaderDict['Project'] = project
self.fileHeaderDict['minElectSpcng'] = round(float(self.dataLead[1][0]),2)
self.fileHeaderDict['Array'] = array
self.fileHeaderDict["Type of Measurement"] = msrmtType
self.fileHeaderDict['DataPts'] = self.dataLead[3][0]
self.dataframeIN = pd.DataFrame(self.dataListIN)
#Sometimes the data is read in with an extra column at the beginning. This fixes that.
if len(self.dataframeIN.columns) > 4:
del self.dataframeIN[0]
self.dataframeIN.reindex([0, 1, 2, 3], axis='columns')
self.dataframeIN = self.dataframeIN.astype(float)
self.dataframeIN.columns = self.dataHeaders
self.dataframeCols = [-2, -3, -4, -5, -6, 0, -7, -8, -9, 1, 2, -10, -11, -12, 3, -1, -1, -13, -14, -15,-16] # neg val ind. colums that need to be calculated
self.dataframeEDIT = pd.DataFrame()
dataframelength = len(self.dataframeIN.index)
nullList = []
keepList = []
zeroList = []
for i in range(0, dataframelength):
nullList.append(-1)
zeroList.append(0.0)
keepList.append(True)
# Create dataframe that will be used in editing process (self.dataframeEDIT) one column at a time
for item in enumerate(self.dataframeEDITColHeaders):
if self.dataframeCols[
item[0]] > -1: # Columns from dataframeIN that are directly read to dataframeEDIT
self.dataframeEDIT[item[1]] = self.dataframeIN.iloc[:, self.dataframeCols[item[0]]]
self.dataframeEDIT[item[1]] = self.dataframeEDIT[item[1]].astype(float)
elif self.dataframeCols[item[0]] == -1: # Null list (can't calculate)
self.dataframeEDIT[item[1]] = nullList
elif self.dataframeCols[item[0]] == -2: # Measure ID
for i in range(0, dataframelength):
self.dataframeEDIT.loc[i, item[1]] = i
elif self.dataframeCols[item[0]] == -3: # A(x)
self.dataframeIN['A(x)'] = self.dataframeIN['M(x)'] + self.dataframeIN['aVal'] + (self.dataframeIN['aVal']*self.dataframeIN['nFac']) + self.dataframeIN['aVal']
self.dataframeEDIT['A(x)'] = self.dataframeIN['A(x)']
elif self.dataframeCols[item[0]] == -4: # A(z)
self.dataframeEDIT[item[1]] = zeroList
elif self.dataframeCols[item[0]] == -5: # B(x)
self.dataframeIN['B(x)'] = self.dataframeIN['M(x)'] + self.dataframeIN['aVal'] + (self.dataframeIN['aVal']*self.dataframeIN['nFac'])
self.dataframeEDIT['B(x)'] = self.dataframeIN['B(x)']
elif self.dataframeCols[item[0]] == -6: # B(z)
self.dataframeEDIT[item[1]] = zeroList
#elif self.dataframeCols[item[0]] == -6: # M(x)
#Reads in directly
elif self.dataframeCols[item[0]] == -7: # M(z)
self.dataframeEDIT[item[1]] = zeroList
elif self.dataframeCols[item[0]] == -8: #N(x)
self.dataframeIN['N(x)'] = self.dataframeIN['M(x)'] + self.dataframeIN['aVal']
self.dataframeEDIT['N(x)'] = self.dataframeIN['N(x)']
elif self.dataframeCols[item[0]] == -9: # N(z)
self.dataframeEDIT[item[1]] = zeroList
elif self.dataframeCols[item[0]] == -10: # PseudoX
self.dataframeEDIT['PseudoX'] = (((self.dataframeEDIT['A(x)'] + self.dataframeEDIT[
'B(x)']) / 2) + ((self.dataframeEDIT['M(x)'] + self.dataframeEDIT['N(x)']) / 2)) / 2
elif self.dataframeCols[item[0]] == -11: # PseudoZ
n = self.dataframeEDIT['nFac']
a = self.dataframeEDIT['aVal']
self.dataframeEDIT['PseudoZ'] = round((((n ** 2) * -0.0018) + 0.2752 * n + 0.1483) * a, 1)
elif self.dataframeCols[item[0]] == -12: #Resistance
PI = math.pi
n = self.dataframeEDIT['nFac']
a = self.dataframeEDIT['aVal']
appR = self.dataframeIN['AppResist']
if self.fileHeaderDict['Array'] == 'Dipole-Dipole':
self.dataframeEDIT['Resistance'] = appR/(PI * n * (n + 1) * (n + 2) * a)
else:
print('Array is not Dipole-Dipole, but Dipole-Dipole k-factor used to calculate App. Resistivity')
elif self.dataframeCols[item[0]] == -13: #DataLevel
self.dataframeEDIT['DataLevel'] = nullList
uniqueDepths = self.dataframeEDIT['PseudoZ'].unique()
uniqueDepths = list(set(uniqueDepths.flatten()))
self.dataLevels = len(uniqueDepths)
dataLength = len(self.dataframeEDIT['PseudoZ'])
for i in range(0, dataLength):
self.dataframeEDIT.loc[i, 'DataLevel'] = uniqueDepths.index(
self.dataframeEDIT.loc[i, 'PseudoZ'])
elif self.dataframeCols[item[0]] == -14: #DtLvlMean
for i in uniqueDepths:
df = self.dataframeEDIT[self.dataframeEDIT.iloc[:, 12] == i]
dtLvlMean = df['AppResist'].mean()
indexList = df.index.values.tolist()
for ind in indexList:
self.dataframeEDIT.loc[ind, 'DtLvlMean'] = dtLvlMean
elif self.dataframeCols[item[0]] == -15: #PctErr
self.dataframeEDIT['PctErr'] = (abs(
self.dataframeEDIT['DtLvlMean'] - self.dataframeEDIT['AppResist'])) / \
self.dataframeEDIT['DtLvlMean']
elif self.dataframeCols[item[0]] == -16: #Keep
self.dataframeEDIT[item[1]] = keepList
else:
self.dataframeEDIT[item[1]] = nullList
elif self.inputDataExt == '.DAT (LS)': # If it's .DAT (LS)
self.dataHeaders = ["NoElectrodes",'A(x)', 'A(z)', 'B(x)', 'B(z)', 'M(x)', 'M(z)', 'N(x)', 'N(z)', 'Resistance']
datalength=12
dataList = []
for row in enumerate(data):
if row[0]>int(self.headerlines) and row[0] <= float(self.headerlines + datalength):
strrow = str(row[1])
strrow = strrow[2:-2]
splitrow = strrow.split('\\t')
if len(splitrow) != 10:
newrow = []
for i in splitrow:
val = i.strip()
newrow.append(val)
if len(newrow) < 9:
newrow = re.split(' +',newrow[0])
row = [float(i) for i in newrow]
dataList.append(row)
else:
dataList.append(splitrow)
elif row[0] <= int(self.headerlines):
if isinstance(row[1], list):
val = str(row[1])[2:-2]
else:
val = row[1]
self.dataLead.append(val)
if row[0] == 6:
datalength = float(row[1][0])
else:
self.dataTail.append(row[1])
self.dataListIN = dataList
self.fileHeaderDict = {}
project = self.dataLead[0]
dataFrmt = self.dataLead[2]
array = int(self.dataLead[3])
if array == 3:
array = "Dipole-Dipole"
msrmtType = str(self.dataLead[5])
if msrmtType.strip() == '0':
msrmtType = "Apparent Resistivity"
else:
msrmtType = 'Resistance'
self.fileHeaderDict['Filename'] = filename
self.fileHeaderDict['Project'] = project
self.fileHeaderDict['minElectSpcng'] = str(round(float(self.dataLead[1]),2))
self.fileHeaderDict['Array'] = array
self.fileHeaderDict["Type of Measurement"] = msrmtType
self.fileHeaderDict['DataPts'] = str(self.dataLead[6])
self.fileHeaderDict['DistType'] = str(self.dataLead[7])
self.dataframeIN = pd.DataFrame(self.dataListIN)
self.dataframeIN.columns = self.dataHeaders
self.dataframeCols = [-2, 1, 2, 3, 4, 5, 6, 7, 8, -3, -4, -5, -6, 9, -7, -1, -1, -8, -9, -10, -11] # neg val ind. colums that need to be calculated
self.dataframeEDIT = pd.DataFrame()
dataframelength = len(self.dataframeIN.index)
nullList = []
keepList = []
for i in range(0, dataframelength):
nullList.append(-1)
keepList.append(True)
# Create dataframe that will be used in editing process (self.dataframeEDIT) one column at a time
for item in enumerate(self.dataframeEDITColHeaders):
if self.dataframeCols[item[0]] > -1: #Columns from dataframeIN that are directly read to dataframeEDIT
self.dataframeEDIT[item[1]] = self.dataframeIN.iloc[:, self.dataframeCols[item[0]]]
self.dataframeEDIT[item[1]] = self.dataframeEDIT[item[1]].astype(float)
elif self.dataframeCols[item[0]] == -1: #Null list (can't calculate)
self.dataframeEDIT[item[1]] = nullList
elif self.dataframeCols[item[0]] == -2:#Measure ID
for i in range(0,dataframelength):
self.dataframeEDIT.loc[i,item[1]] = i
elif self.dataframeCols[item[0]] == -3: #A spacing
self.dataframeEDIT[item[1]] = abs(self.dataframeEDIT['A(x)'] - self.dataframeEDIT['B(x)'])
elif self.dataframeCols[item[0]] == -4: #N-factor
self.dataframeEDIT[item[1]] = abs(self.dataframeEDIT['B(x)'] - self.dataframeEDIT['N(x)']) / self.dataframeEDIT['aVal']
elif self.dataframeCols[item[0]] == -5:#PseduoX
self.dataframeEDIT['PseudoX'] = (((self.dataframeEDIT['A(x)']+self.dataframeEDIT['B(x)'])/2)+((self.dataframeEDIT['M(x)']+self.dataframeEDIT['N(x)'])/2))/2
elif self.dataframeCols[item[0]] == -6: #PseduoZ
n = self.dataframeEDIT['nFac']
a = self.dataframeEDIT['aVal']
self.dataframeEDIT['PseudoZ'] = round((((n**2)*-0.0018)+0.2752*n+0.1483)*a,1)
elif self.dataframeCols[item[0]] == -7:#AppResistivity
PI = math.pi
n = self.dataframeEDIT['nFac']
a = self.dataframeEDIT['aVal']
R = self.dataframeEDIT['Resistance']
if self.fileHeaderDict['Array'] == 'Dipole-Dipole':
self.dataframeEDIT['AppResist'] = PI*n*(n+1)*(n+2)*a*R
else:
print('Array is not Dipole-Dipole, but Dipole-Dipole k-factor used to calculate App. Resistivity')
elif self.dataframeCols[item[0]] == -8: #DataLevel
self.dataframeEDIT['DataLevel'] = nullList
uniqueDepths = self.dataframeEDIT['PseudoZ'].unique()
uniqueDepths = list(set(uniqueDepths.flatten()))
self.dataLevels = len(uniqueDepths)
dataLength = len(self.dataframeEDIT['PseudoZ'])
for i in range(0, dataLength):
self.dataframeEDIT.loc[i, 'DataLevel'] = uniqueDepths.index(self.dataframeEDIT.loc[i, 'PseudoZ'])
elif self.dataframeCols[item[0]] == -9: # DtLvlMean
for i in uniqueDepths:
df = self.dataframeEDIT[self.dataframeEDIT.iloc[:, 12] == i]
dtLvlMean = df['AppResist'].mean()
indexList = df.index.values.tolist()
for ind in indexList:
self.dataframeEDIT.loc[ind, 'DtLvlMean'] = dtLvlMean
elif self.dataframeCols[item[0]] == -10: #PctErr
self.dataframeEDIT['PctErr'] = (abs(
self.dataframeEDIT['DtLvlMean'] - self.dataframeEDIT['AppResist'])) / \
self.dataframeEDIT['DtLvlMean']
elif self.dataframeCols[item[0]] == -11: #Keep
self.dataframeEDIT[item[1]] = keepList
else:
self.dataframeEDIT[item[1]] = nullList
self.readInFileBtn.SetLabelText("Reset Data")
elif self.inputDataExt.lower() == '.txt':
with open(filepath, 'r') as datafile:
filereader = csv.reader(datafile)
start = 0
end = 0
fileHeader = []
data = []
for row in enumerate(filereader):
if start == 0:
if row[0] <= 13:
fileHeader.append(row[1])
fileHeader[row[0]] = fileHeader[row[0]][:]
if 'N\\tTime' in str(row[1]):
start = 1
self.headerlines = row[0]
dataHdrTemp = str(row[1])
self.dataHeaders = dataHdrTemp[2:-2].split('\\t')
self.dataHeaders[1] = dataHdrTemp[1].strip()
self.fileHeaderDict = {}
for item in fileHeader:
if len(item) > 0:
self.fileHeaderDict[str(item[0]).split(":", 1)[0]] = str(item[0]).split(":", 1)[1].strip()
elif start == 1 and end == 0:
if len(row[1]) > 0:
data.append(str(row[1])[2:-1].split('\\t'))
else:
end = 1
else:
continue
self.dataListIN = data
self.dataframeIN = pd.DataFrame(self.dataListIN)
self.dataframeCols = [0, 6, 8, 9, 11, 12, 14, 15, 17, -2, -3, 18, 20, 26, 28, 29, 27, -4, -5, -6, -7] #neg val ind. colums that need to be calculated
self.dataframeEDIT = pd.DataFrame()
dataframelength = len(self.dataframeIN.index)
nullList = []
keepList = []
for i in range(0, dataframelength):
nullList.append(-1)
keepList.append(True)
# Create dataframe that will be used in editing process (self.dataframeEDIT) one column at a time
for item in enumerate(self.dataframeEDITColHeaders):
if self.dataframeCols[item[0]] > -1:
#print(item[1])
self.dataframeEDIT[item[1]] = self.dataframeIN.iloc[:, self.dataframeCols[item[0]]]
self.dataframeEDIT[item[1]] = self.dataframeEDIT[item[1]].astype(float)
elif self.dataframeCols[item[0]] == -2:
self.dataframeEDIT[item[1]] = abs(self.dataframeEDIT['A(x)'] - self.dataframeEDIT['B(x)'])
elif self.dataframeCols[item[0]] == -3:
self.dataframeEDIT[item[1]] = abs(self.dataframeEDIT['N(x)'] - self.dataframeEDIT['M(x)']) / self.dataframeEDIT['aVal']
elif self.dataframeCols[item[0]] == -4:
self.dataframeEDIT['DataLevel'] = nullList
uniqueDepths = self.dataframeEDIT['PseudoZ'].unique()
uniqueDepths = list(set(uniqueDepths.flatten()))
self.dataLevels = len(uniqueDepths)
dataLength = len(self.dataframeEDIT['PseudoZ'])
for i in range(0, dataLength):
self.dataframeEDIT.loc[i, 'DataLevel'] = uniqueDepths.index(self.dataframeEDIT.loc[i, 'PseudoZ'])
elif self.dataframeCols[item[0]] == -5:
for i in uniqueDepths:
df = self.dataframeEDIT[self.dataframeEDIT.iloc[:, 12] == i]
dtLvlMean = df['AppResist'].mean()
indexList = df.index.values.tolist()
for ind in indexList:
self.dataframeEDIT.loc[ind, 'DtLvlMean'] = dtLvlMean
elif self.dataframeCols[item[0]] == -6:
self.dataframeEDIT['PctErr'] = (abs(self.dataframeEDIT['DtLvlMean'] - self.dataframeEDIT['AppResist'])) / self.dataframeEDIT['DtLvlMean']
elif self.dataframeCols[item[0]] == -7:
self.dataframeEDIT[item[1]] = keepList
else:
self.dataframeEDIT[item[1]] = nullList
self.dataHeaders[1] = 'MeasTime'
if len(self.dataHeaders) > 37:
self.dataHeaders[37] = 'Extra'
self.dataTail = [0,0,0,0,0,0,0]
self.dataframeIN.columns = self.dataHeaders
self.readInFileBtn.SetLabelText("Reset Data")
self.fileHeaderDict['Filename'] = filename
self.fileHeaderDict['Project'] = self.fileHeaderDict['Project name']
self.fileHeaderDict['Array'] = self.fileHeaderDict['Protocol file'][21:-4]
self.fileHeaderDict['minElectSpcng'] = self.fileHeaderDict['Smallest electrode spacing']
self.fileHeaderDict['DataPts'] = len(self.dataframeIN)
self.dataLead = []
self.dataLead.append(self.fileHeaderDict['Project name'] + " " + self.fileHeaderDict['Filename'])
self.dataLead.append(self.fileHeaderDict['minElectSpcng'])
self.dataLead.append('11') #General Array format
self.dataLead.append(self.fileHeaderDict['Sub array code']) #tells what kind of array is used
self.dataLead.append('Type of measurement (0=app.resistivity,1=resistance)')
self.dataLead.append('0') #Col 26 in .txt (col 28 is app. resistivity)
self.dataLead.append(self.fileHeaderDict['DataPts'])
self.dataLead.append('2')
self.dataLead.append('0')
elif self.inputDataExt.lower() == '.vtk':
with open(filepath, 'r') as datafile:
filereader = csv.reader(datafile)
startLocs = 0
startData = 0
startLocInd = 'POINTS'
startDataInd = 'LOOKUP_TABLE'
endLocs = 0
endData = 0
endLocInd = []
endDataInd = []
fileLead = []
fileMid = []
fileTail = []
vtkdata = []
vtklocs = []
newrow = []
xLocPts = []
yLocPts = []
zLocPts = []
vPts = []
for row in enumerate(filereader):
if startLocs == 0:
fileLead.append(row[1])
fileLead[row[0]] = fileLead[row[0]][:]
if startLocInd in str(row[1]):
startLocs = 1
elif startLocs == 1 and endLocs == 0:
if endLocInd == row[1]:
endLocs = 1
else:
newrow = re.split(' +', str(row[1][0]))
newrow = newrow[1:]
vtklocs.append(newrow)
elif startData == 0:
fileMid.append(row[1])
if startDataInd in str(row[1]):
startData = 1
elif startData == 1 and endData == 0:
if row[1] == endDataInd:
endData == 1
else:
newrow = re.split(' +', str(row[1][0]))
newrow = newrow[1:]
vtkdata.append(newrow)
else:
fileTail.append(row[1])
fileTail[row[0]] = fileTail[row[0]][:]
xPtCols = [0,3,6,9]
yPtCols = [1,4,7,10]
zPtCols = [2,5,8,11]
for r in vtklocs:
Xs = 0.0